A simple alkali lysis method for Plasmodium falciparum DNA extraction from filter paper blood samples

被引:3
|
作者
Xiang, Zheng [1 ]
Li, Danlin [1 ]
Wang, Siqi [1 ]
Shen, Ting [1 ]
He, Wen [1 ]
Li, Mier [1 ]
Zeng, Weilin [1 ]
Chen, Xi [1 ]
Wu, Yanrui [3 ]
Cui, Liwang [2 ]
Yang, Zhaoqing [1 ]
机构
[1] Kunming Med Univ, Fac Basic Med Sci, Dept Pathogen Biol & Immunol, Kunming 650500, Yunnan, Peoples R China
[2] Univ S Florida, Dept Internal Med, Tampa, FL 33612 USA
[3] Kunming Med Univ, Dept Cell Biol & Genet, Kunming 650500, Yunnan, Peoples R China
基金
美国国家科学基金会; 美国国家卫生研究院;
关键词
DNA extraction; Alkali lysis; Plasmodium falciparum; POLYMERASE-CHAIN-REACTION; REAL-TIME-PCR; MALARIA DETECTION; GENOMIC DNA; DRIED BLOOD; SENSITIVITY; DIAGNOSIS; SPOTS;
D O I
10.1016/j.molbiopara.2023.111557
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
A fast, simple, easy, efficient, and inexpensive method for DNA extraction from malaria parasites collected on filter paper would be very useful for molecular surveillance. The quality and quantity of DNA are critical to molecular diagnosis and analysis. Here, we developed a simple alkali lysis method for DNA extraction from blood samples on filter paper. The results showed that 10-50 mM NaOH and deionized water all effectively isolated parasite DNA at higher parasitemia, as witnessed by successful PCR amplification, while at a parasitemia of 0.01%, the 10 mM NaOH lysis condition generated the best results. Furthermore, DNA extracted by this method was successfully used to amplify a fragment of > 2000 bp. This method successfully extracted DNA from 1 mu l of blood at a parasitemia as low as 0.0001% (equivalent to 5 parasites /mu l). The DNA isolated by the 10 mM NaOH lysis method was stable to yield PCR products after storage at 4 degrees C or -20 degrees C for 12 months. These results indicate that this alkali lysis method is simple, effective, sensitive, and inexpensive for isolating stable Plasmo-dium DNA from dried blood spots on filter paper.
引用
收藏
页数:6
相关论文
共 50 条
  • [21] A nested real-time PCR assay for the quantification of Plasmodium falciparum DNA extracted from dried blood spots
    Tran, Tuan M.
    Aghili, Amirali
    Li, Shanping
    Ongoiba, Aissata
    Kayentao, Kassoum
    Doumbo, Safiatou
    Traore, Boubacar
    Crompton, Peter D.
    MALARIA JOURNAL, 2014, 13
  • [22] A Simple, Inexpensive Alkaline Method for Bacterial DNA Extraction from Environmental Samples for PCR Surveillance and Microbiome Analyses
    Shwani, Abdulkarim
    Zuo, Bin
    Alrubaye, Adnan
    Zhao, Jiangchao
    Rhoads, Douglas D.
    APPLIED SCIENCES-BASEL, 2024, 14 (01):
  • [23] Comparison of DNA extraction methods for samples from old blood collections
    Tagliaferro, Sarah Samut
    Zejnelagic, Azra
    Farrugia, Rosienne
    Wettinger, Stephanie Bezzina
    BIOTECHNIQUES, 2021, 70 (05)
  • [24] Single Lysis-Salting Out Method of Genomic DNA Extraction From Dried Blood Spots
    Shaik, Muntaj
    Shivanna, Devaraju Kuramkote
    Kamate, Mahesh
    Vedamurthy, A. B.
    Kruthika-Vinod, T. P.
    JOURNAL OF CLINICAL LABORATORY ANALYSIS, 2016, 30 (06) : 1009 - 1012
  • [25] A simple method of DNA extraction and STR typing from urine samples using a commercially available DNA/RNA extraction kit
    Yasuda, T
    Iida, R
    Takeshita, H
    Ueki, M
    Nakajima, T
    Kaneko, Y
    Mogi, K
    Tsukahara, T
    Kishi, K
    JOURNAL OF FORENSIC SCIENCES, 2003, 48 (01) : 108 - 110
  • [26] Modification of the filter-inserted tip method for simple and rapid DNA extraction from strawberry
    Watanabe, Manabu
    Fukami, Masanobu
    PLANT BIOTECHNOLOGY, 2016, 33 (02) : 133 - 136
  • [27] An alternate method for DNA and RNA extraction from clotted blood
    Zakaria, Z.
    Umi, S. H.
    Mokhtar, S. S.
    Mokhtar, U.
    Zaiharina, M. Z.
    Aziz, A. T. A.
    Hoh, B. P.
    GENETICS AND MOLECULAR RESEARCH, 2013, 12 (01) : 302 - 311
  • [28] Twelve microsatellite markers for characterization of Plasmodium falciparum from finger-prick blood samples
    Anderson, TJC
    Su, XZ
    Bockarie, M
    Lagog, M
    Day, KP
    PARASITOLOGY, 1999, 119 : 113 - 125
  • [29] A reproducible method for extraction of Plasmodium falciparum DNA by microwave irradiation and its potential for rapid molecular diagnosis
    Jaturas, Narong
    Onnoi, Naruemon
    Kumar, Thulasi
    Jie, Brandon Mong Guo
    Onichandran, Subashini
    Ponnampalavanar, Sasheela
    Thanwisai, Aunchalee
    Tan, Tian Chye
    Sawangjaroen, Nongyao
    Nissapatorn, Veeranoot
    TROPICAL BIOMEDICINE, 2015, 32 (04) : 753 - 760
  • [30] Optimization of Total DNA Extraction from Dried Blood Samples
    Samsonova, Jeanne V.
    Saushkin, Nikolay Yu.
    Voronkova, Valery N.
    Stolpovsky, Yuri A.
    Piskunov, Aleksei K.
    BIOCHEMICAL GENETICS, 2024,