Rigorous estimates for the quasi-steady state approximation of the Michaelis-Menten reaction mechanism at low enzyme concentrations

被引:0
作者
Eilertsen, Justin [1 ]
Schnell, Santiago [2 ,3 ]
Walcher, Sebastian [4 ]
机构
[1] Amer Math Soc, Math Reviews, 416 4th St, Ann Arbor, MI 48103 USA
[2] Univ Notre Dame, Dept Biol Sci, Notre Dame, IN 46556 USA
[3] Univ Notre Dame, Dept Appl & Computat Math & Stat, Notre Dame, IN 46556 USA
[4] Rhein Westfal TH Aachen, Math A, D-52056 Aachen, Germany
关键词
Timescales; Dynamical systems; Ordinary differential equations; Phase plane analysis; Differential inequalities; Error analysis; KINETICS; ASSUMPTION; VALIDITY;
D O I
10.1016/j.nonrwa.2024.104088
中图分类号
O29 [应用数学];
学科分类号
070104 ;
摘要
There is a vast amount of literature concerning the appropriateness of various perturbation parameters for the standard quasi -steady state approximation in the Michaelis-Menten reaction mechanism, and also concerning the relevance of these parameters for the accuracy of the approximation by the familiar Michaelis-Menten equation. Typically, the arguments in the literature are based on (heuristic) timescale estimates, from which one cannot obtain reliable quantitative estimates for the error of the quasi -steady state approximation. We take a different approach. By combining phase plane analysis with differential inequalities, we derive sharp explicit upper and lower estimates for the duration of the initial transient and substrate depletion during this transitory phase. In addition, we obtain rigorous bounds on the accuracy of the standard quasi -steady state approximation in the slow dynamics regime. Notably, under the assumption that the quasi -steady state approximation is valid over the entire time course of the reaction, our error estimate is of order one in the Segel-Slemrod parameter.
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页数:27
相关论文
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