Saxibacter everestensis gen. nov., sp. nov., A Novel Member of the Family Brevibacteriaceae, Isolated from the North Slope of Mount Everest

被引:0
作者
Tian, Mao [1 ,2 ,3 ]
Wu, Shiyu [1 ,2 ,3 ]
Zhang, Wei [2 ,4 ]
Zhang, Gaosen [2 ,4 ]
Yu, Xue [2 ,3 ,4 ]
Wu, Yujie [2 ,3 ,4 ]
Jia, Puchao [2 ,3 ,4 ]
Zhang, Binglin [1 ,2 ,3 ]
Chen, Tuo [1 ,2 ]
Liu, Guangxiu [2 ,4 ]
机构
[1] Chinese Acad Sci, Northwest Inst Ecoenvironm & Resources, State Key Lab Cryospher Sci, Lanzhou 730000, Peoples R China
[2] Key Lab Extreme Environm Microbial Resources & Eng, Lanzhou 730000, Gansu, Peoples R China
[3] Univ Chinese Acad Sci, Beijing 100049, Peoples R China
[4] Chinese Acad Sci, Northwest Inst Ecoenvironm & Resources, Key Lab Desert & Desertificat, Lanzhou 730000, Peoples R China
基金
中国国家自然科学基金; 国家重点研发计划;
关键词
Comparative genomics; Mount Everest; Novel species; Polyphasic taxonomy; Saxibacter everestensis; DEEP-SEA SEDIMENT; ACTINOBACTERIA; CLASSIFICATION; SEQUENCES; NOCARDIA; IDENTITY; PROPOSAL; TREES;
D O I
10.1007/s12275-024-00108-1
中图分类号
Q93 [微生物学];
学科分类号
071005 ; 100705 ;
摘要
We isolated and analyzed a novel, Gram-stain-positive, aerobic, rod-shaped, non-motile actinobacterium, designated as strain ZFBP1038(T), from rock sampled on the north slope of Mount Everest. The growth requirements of this strain were 10-37 degree celsius, pH 4-10, and 0-6% (w/v) NaCl. The sole respiratory quinone was MK-9, and the major fatty acids were anteiso-C-15:0 and iso-C-17:0. Peptidoglycan containing meso-diaminopimelic acid, ribose, and glucose were the major cell wall sugars, while polar lipids included diphosphatidyl glycerol, phosphatidyl glycerol, an unidentified phospholipid, and an unidentified glycolipid. A phylogenetic analysis based on 16S rRNA gene sequences showed that strain ZFBP1038(T) has the highest similarity with Spelaeicoccus albus DSM 26341( T) (96.02%). ZFBP1038(T) formed a distinct monophyletic clade within the family Brevibacteriaceae and was distantly related to the genus Spelaeicoccus. The G + C content of strain ZFBP1038(T) was 63.65 mol% and the genome size was 4.05 Mb. Digital DNA-DNA hybridization, average nucleotide identity, and average amino acid identity values between the genomes of strain ZFBP1038(T) and representative reference strains were 19.3-25.2, 68.0-71.0, and 52.8-60.1%, respectively. Phylogenetic, phenotypic, and chemotaxonomic characteristics as well as comparative genome analyses suggested that strain ZFBP1038(T) represents a novel species of a new genus, for which the name Saxibacter gen. nov., sp. nov. was assigned with the type strain Saxibacter everestensis ZFBP1038(T) (= EE 014( T) = GDMCC 1.3024( T) = JCM 35335( T)).
引用
收藏
页码:277 / 284
页数:8
相关论文
共 46 条
[1]   AutoMLST: an automated web server for generating multi-locus species trees highlighting natural product potential [J].
Alanjary, Mohammad ;
Steinke, Katharina ;
Ziemert, Nadine .
NUCLEIC ACIDS RESEARCH, 2019, 47 (W1) :W276-W282
[2]   BASIC LOCAL ALIGNMENT SEARCH TOOL [J].
ALTSCHUL, SF ;
GISH, W ;
MILLER, W ;
MYERS, EW ;
LIPMAN, DJ .
JOURNAL OF MOLECULAR BIOLOGY, 1990, 215 (03) :403-410
[3]   The RAST server: Rapid annotations using subsystems technology [J].
Aziz, Ramy K. ;
Bartels, Daniela ;
Best, Aaron A. ;
DeJongh, Matthew ;
Disz, Terrence ;
Edwards, Robert A. ;
Formsma, Kevin ;
Gerdes, Svetlana ;
Glass, Elizabeth M. ;
Kubal, Michael ;
Meyer, Folker ;
Olsen, Gary J. ;
Olson, Robert ;
Osterman, Andrei L. ;
Overbeek, Ross A. ;
McNeil, Leslie K. ;
Paarmann, Daniel ;
Paczian, Tobias ;
Parrello, Bruce ;
Pusch, Gordon D. ;
Reich, Claudia ;
Stevens, Rick ;
Vassieva, Olga ;
Vonstein, Veronika ;
Wilke, Andreas ;
Zagnitko, Olga .
BMC GENOMICS, 2008, 9 (1)
[4]   GeneMark: web software for gene finding in prokaryotes, eukaryotes and viruses [J].
Besemer, J ;
Borodovsky, M .
NUCLEIC ACIDS RESEARCH, 2005, 33 :W451-W454
[5]   Brevibacterium oceani sp nov., isolated from deep-sea sediment of the Chagos Trench, Indian Ocean [J].
Bhadra, Bhaskar ;
Raghukumar, Chandralata ;
Pindi, Pavan Kumar ;
Shivaji, Sisinthy .
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 2008, 58 :57-60
[6]   CRISPR Recognition Tool (CRT): a tool for automatic detection of clustered regularly interspaced palindromic repeats [J].
Bland, Charles ;
Ramsey, Teresa L. ;
Sabree, Fareedah ;
Lowe, Micheal ;
Brown, Kyndall ;
Kyrpides, Nikos C. ;
Hugenholtz, Philip .
BMC BIOINFORMATICS, 2007, 8 (1)
[7]  
Breed RS., 1953, 6 C INT MICR ROM, V1, P10
[8]   RASTtk: A modular and extensible implementation of the RAST algorithm for building custom annotation pipelines and annotating batches of genomes [J].
Brettin, Thomas ;
Davis, James J. ;
Disz, Terry ;
Edwards, Robert A. ;
Gerdes, Svetlana ;
Olsen, Gary J. ;
Olson, Robert ;
Overbeek, Ross ;
Parrello, Bruce ;
Pusch, Gordon D. ;
Shukla, Maulik ;
Thomason, James A., III ;
Stevens, Rick ;
Vonstein, Veronika ;
Wattam, Alice R. ;
Xia, Fangfang .
SCIENTIFIC REPORTS, 2015, 5
[9]   Brevibacterium sediminis sp nova, isolated from deep-sea sediments from the Carlsberg and Southwest Indian Ridges [J].
Chen, Ping ;
Zhang, Limin ;
Wang, Jian ;
Ruan, Jisheng ;
Han, Xiqiu ;
Huang, Ying .
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 2016, 66 :5268-5274
[10]   Brevibacterium daeguense sp nov., a nitrate-reducing bacterium isolated from a 4-chlorophenol enrichment culture [J].
Cui, Yingshun ;
Kang, Myung-Suk ;
Woo, Sung-Geun ;
Jin, Long ;
Kim, Kwang Kyu ;
Park, Joonhong ;
Lee, Myungjin ;
Lee, Sung-Taik .
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 2013, 63 :152-157