Identification and quantification of DNA N6-methyladenine modification in mammals: A challenge to modern analytical technologies

被引:4
作者
Lyu, Cong [1 ]
Wang, Hui-Dong [1 ]
Lai, Weiyi [1 ]
Wang, Hailin [1 ,2 ,3 ]
机构
[1] Chinese Acad Sci, Res Ctr Ecoenvironm Sci, State Key Lab Environm Chem & Ecotoxi col, Beijing 100085, Peoples R China
[2] UCAS, Hangzhou Inst Adv Study, Sch Environm, Hangzhou 310024, Peoples R China
[3] Univ Chinese Acad Sci, Beijing, Peoples R China
基金
中国国家自然科学基金;
关键词
ADENINE METHYLATION; N-6-METHYLADENINE; N-6-ADENINE; BASE;
D O I
10.1016/j.cbpa.2022.102259
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
DNA N6-methyladenine modification (6mA) is a predominant epigenetic mark in prokaryotes but rarely present in multicel-lular metazoa. The analytical technologies have been devel-oped for sensitive detection of 6mA, including ultra-high performance liquid chromatography coupled with mass spec-trometry (UHPLC-MS/MS) and single molecule real-time sequencing (SMRTseq). However, it remains challenging to detect 6mA at global level and/or in the context of sequence in multicellular metazoa (including mammals). This mini-review brings insights into current dilemma and potential solutions for the identification and quantifications of 6mA in mammals.
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页数:7
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共 31 条
  • [1] No evidence for DNA N6-methyladenine in mammals
    Douvlataniotis, Karolos
    Bensberg, Maike
    Lentini, Antonio
    Gylemo, Bjorn
    Nestor, Coim E.
    [J]. SCIENCE ADVANCES, 2020, 6 (12):
  • [2] OCCURRENCE OF A NEW BASE IN THE DEOXYRIBONUCLEIC ACID OF A STRAIN OF BACTERIUM-COLI
    DUNN, DB
    SMITH, JD
    [J]. NATURE, 1955, 175 (4451) : 336 - 337
  • [3] OCCURRENCE OF 6-METHYLAMINOPURINE IN DEOXYRIBONUCLEIC ACIDS
    DUNN, DB
    SMITH, JD
    [J]. BIOCHEMICAL JOURNAL, 1958, 68 : 627 - 636
  • [4] ENGEL JD, 1978, J BIOL CHEM, V253, P935
  • [5] Flusberg BA, 2010, NAT METHODS, V7, P461, DOI [10.1038/NMETH.1459, 10.1038/nmeth.1459]
  • [6] N6-Methyldeoxyadenosine Marks Active Transcription Start Sites in Chlamydomonas
    Fu, Ye
    Luo, Guan-Zheng
    Chen, Kai
    Deng, Xin
    Yu, Miao
    Han, Dali
    Hao, Ziyang
    Liu, Jianzhao
    Lu, Xingyu
    Dore, Louis C.
    Weng, Xiaocheng
    Ji, Quanjiang
    Mets, Laurens
    He, Chuan
    [J]. CELL, 2015, 161 (04) : 879 - 892
  • [7] DNA Methylation on N6-Adenine in C-elegans
    Greer, Eric Lieberman
    Blanco, Mario Andres
    Gu, Lei
    Sendinc, Erdem
    Liu, Jianzhao
    Aristizabal-Corrales, David
    Hsu, Chih-Hung
    Aravind, L.
    He, Chuan
    Shi, Yang
    [J]. CELL, 2015, 161 (04) : 868 - 878
  • [8] Critical assessment of DNA adenine methylation in eukaryotes using quantitative deconvolution
    Kong, Yimeng
    Cao, Lei
    Deikus, Gintaras
    Fan, Yu
    Mead, Edward A.
    Lai, Weiyi
    Zhang, Yizhou
    Yong, Raymund
    Sebra, Robert
    Wang, Hailin
    Zhang, Xue-Song
    Fang, Gang
    [J]. SCIENCE, 2022, 375 (6580) : 515 - +
  • [9] An Adversarial DNA N6-Methyladenine-Sensor Network Preserves Polycomb Silencing
    Kweon, Soo-Mi
    Chen, Yibu
    Moon, Eugene
    Kvederaviciute, Kotryna
    Klimasauskas, Saulius
    Feldman, Douglas E.
    [J]. MOLECULAR CELL, 2019, 74 (06) : 1138 - +
  • [10] Profiling of epigenetic DNA modifications by advanced liquid chromatography-mass spectrometry technologies
    Lai, Weiyi
    Mo, Jiezhen
    Yin, Junfa
    Lyu, Cong
    Wang, Hailin
    [J]. TRAC-TRENDS IN ANALYTICAL CHEMISTRY, 2019, 110 : 173 - 182