In Silico Screening and Identification of Antidiabetic Inhibitors Sourced from Phytochemicals of Philippine Plants against Four Protein Targets of Diabetes (PTP1B, DPP-4, SGLT-2, and FBPase)

被引:12
作者
Macalalad, Mark Andrian B. [1 ]
Gonzales III, Arthur A. A. [1 ]
机构
[1] Univ Philippines Diliman, Dept Chem Engn, Quezon City 1101, Metro Manila, Philippines
来源
MOLECULES | 2023年 / 28卷 / 14期
关键词
diabetes; phytochemicals; natural compounds; PTP1B; DPP-4; SGLT-2; FBPase; ADMET; molecular docking; MD simulations; MM; PBSA; CURCULIGO-ORCHIOIDES; NATURAL-PRODUCTS; AGAVE-SISALANA; PIPER; FRUCTOSE-1,6-BISPHOSPHATASE; DIHYDROCHALCONES; OPTIMIZATION; DOCKING; GROMACS; CHARMM;
D O I
10.3390/molecules28145301
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Current oral medications for type 2 diabetes target a single main physiological mechanism. They either activate or inhibit receptors to enhance insulin sensitivity, increase insulin secretion, inhibit glucose absorption, or inhibit glucose production. In advanced stages, combination therapy may be required because of the limited efficacy of single-target drugs; however, medications are becoming more costly, and there is also the risk of developing the combined side effects of each drug. Thus, identifying a multi-target drug may be the best strategy to improve treatment efficacy. This study sees the potential of 2657 Filipino phytochemicals as a source of natural inhibitors against four targets of diabetes: PTP1B, DPP-4, SGLT-2, and FBPase. Different computer-aided drug discovery techniques, including ADMET profiling, DFT optimization, molecular docking, MD simulations, and MM/PBSA energy calculations, were employed to elucidate the stability and determine the binding affinity of the candidate ligands. Through in silico methods, we have identified seven potential natural inhibitors against PTP1B, DPP-4, and FBPase, and ten against SGLT-2. Eight plants containing at least one natural inhibitor of each protein target were also identified. It is recommended to further investigate the plants' potential to be transformed into a safe and scientifically validated multi-target drug for diabetes therapies.
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页数:33
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共 89 条
  • [1] Two highly conserved glutamic acid residues in the predicted β propeller domain of dipeptidyl peptidase IV are required for its enzyme activity
    Abbott, CA
    McCaughan, GW
    Gorrell, MD
    [J]. FEBS LETTERS, 1999, 458 (03): : 278 - 284
  • [2] Analysis of the lipids and molecular speciation of the triacylglycerol of the oils of Luffa cylindrica and Adenopus breviflorus
    Adewuyi, Adewale
    Oderinde, Rotimi A.
    [J]. CYTA-JOURNAL OF FOOD, 2012, 10 (04) : 313 - 320
  • [3] Akinwumi K, 2021, Natural drugs from plants, DOI [10.5772/intechopen.98405, DOI 10.5772/INTECHOPEN.98405]
  • [4] [Anonymous], 2023, Schrödinger Release2023-2: Materials Science Suite
  • [5] Anslyn E. V., 2006, MODERN PHYS ORGANIC, DOI [10.1021/ed083p387, DOI 10.1021/ED083P387]
  • [6] Comparative Binding Analysis of Dipeptidyl Peptidase IV (DPP-4) with Antidiabetic Drugs - An Ab Initio Fragment Molecular Orbital Study
    Arulmozhiraja, Sundaram
    Matsuo, Naoya
    Ishitsubo, Erika
    Okazaki, Seiji
    Shimano, Hitoshi
    Tokiwa, Hiroaki
    [J]. PLOS ONE, 2016, 11 (11):
  • [7] Natural products in drug discovery: advances and opportunities
    Atanasov, Atanas G.
    Zotchev, Sergey B.
    Dirsch, Verena M.
    Supuran, Claudiu T.
    [J]. NATURE REVIEWS DRUG DISCOVERY, 2021, 20 (03) : 200 - 216
  • [8] Methanolic Root Extract of Rauwolfia serpentina Benth Improves the Glycemic, Antiatherogenic, and Cardioprotective Indices in Alloxan-Induced Diabetic Mice
    Azmi, Muhammad Bilal
    Qureshi, Shamim A.
    [J]. ADVANCES IN PHARMACOLOGICAL SCIENCES, 2012, 2012
  • [9] An update on β-sitosterol: A potential herbal nutraceutical for diabetic management
    Babu, Shyamaladevi
    Jayaraman, Selvaraj
    [J]. BIOMEDICINE & PHARMACOTHERAPY, 2020, 131
  • [10] Baker William L, 2009, Diabetes Res Clin Pract, V84, pe33, DOI 10.1016/j.diabres.2009.01.015