CrossMoDA 2021 challenge: Benchmark of cross-modality domain adaptation techniques for vestibular schwannoma and cochlea segmentation

被引:48
作者
Dorent, Reuben [1 ]
Kujawa, Aaron [1 ]
Ivory, Marina [1 ]
Bakas, Spyridon [2 ,3 ,4 ]
Rieke, Nicola [5 ]
Joutard, Samuel [1 ]
Glocker, Ben [6 ]
Cardoso, Jorge [1 ]
Modat, Marc [1 ]
Batmanghelich, Kayhan [14 ]
Belkov, Arseniy [21 ]
Calisto, Maria Baldeon [18 ]
Choi, Jae Won [9 ]
Dawant, Benoit M. [10 ]
Dong, Hexin [8 ]
Escalera, Sergio [16 ]
Fan, Yubo [10 ]
Hansen, Lasse [17 ]
Heinrich, Mattias P.
Joshi, Smriti [16 ]
Kashtanova, Victoriya [13 ]
Kim, Hyeon Gyu
Kondo, Satoshi [20 ]
Kruse, Christian N. [17 ]
Lai-Yuen, Susana K. [19 ]
Li, Hao [10 ]
Liu, Han [10 ]
Ly, Buntheng [13 ]
Oguz, Ipek [10 ]
Shin, Hyungseob [7 ]
Shirokikh, Boris [22 ,23 ]
Su, Zixian [11 ,12 ]
Wang, Guotai [15 ]
Wu, Jianghao [15 ]
Xu, Yanwu [14 ]
Yao, Kai [11 ,12 ]
Zhang, Li [8 ]
Ourselin, Sebastien [1 ]
Shapey, Jonathan [1 ,24 ]
Vercauteren, Tom [1 ]
机构
[1] Kings Coll London, Sch Biomed Engn & Imaging Sci, London, England
[2] Univ Penn, Ctr Biomed Image Comp & Analyt CB, Philadelphia, PA USA
[3] Univ Penn, Perelman Sch Med, Dept Pathol, Lab Med, Philadelphia, PA USA
[4] Univ Penn, Perelman Sch Med, Dept Radiol, Philadelphia 19104, PA USA
[5] NVIDIA, Munich, Germany
[6] Imperial Coll London, Dept Comp, London, England
[7] Yonsei Univ, Sch Elect & Elect Engn, Seoul, South Korea
[8] Peking Univ, Ctr Data Sci, Beijing, Peoples R China
[9] Armed Forces Yangju Hosp, Dept Radiol, Yangju, South Korea
[10] Vanderbilt Univ, Nashville 37235, TN USA
[11] Univ Liverpool, Liverpool, England
[12] Xian Jiaotong Liverpool Univ, Sch Adv Technol, Suzhou, Peoples R China
[13] Univ Cote Azur, Inria, Sophia Antipolis, France
[14] Univ Pittsburgh, Dept Biomed Informat, Pittsburgh, PA USA
[15] Univ Elect Sci & Technol China, Sch Mech & Elect Engn, Chengdu, Peoples R China
[16] Univ Barcelona, Artificial Intelligence Med Lab, BCN AIM & Human Behav Anal Lab HuPBA, Barcelona, Spain
[17] Univ Lubeck, Inst Med Informat, Lubeck, Germany
[18] Univ San Francisco Quito, Quito, Ecuador
[19] Univ S Florida, Tampa, FL USA
[20] Muroran Inst Technol, Muroran, Japan
[21] Moscow Inst Phys & Technol, Moscow, Russia
[22] Skolkovo Inst Sci & Technol, Moscow, Russia
[23] Artificial Intelligence Res Inst AIRI, Moscow, Russia
[24] Kings Coll Hosp London, Dept Neurosurg, London, England
基金
中国国家自然科学基金; 英国惠康基金; 新加坡国家研究基金会; 英国工程与自然科学研究理事会; 美国国家卫生研究院;
关键词
Domain adaptation; Segmentation; Vestibular schwannoma; SEMANTIC SEGMENTATION; IMAGE SEGMENTATION; MRI; ANATOMY; TOOLKIT;
D O I
10.1016/j.media.2022.102628
中图分类号
TP18 [人工智能理论];
学科分类号
081104 ; 0812 ; 0835 ; 1405 ;
摘要
Domain Adaptation (DA) has recently been of strong interest in the medical imaging community. While a large variety of DA techniques have been proposed for image segmentation, most of these techniques have been validated either on private datasets or on small publicly available datasets. Moreover, these datasets mostly addressed single-class problems.To tackle these limitations, the Cross-Modality Domain Adaptation (crossMoDA) challenge was organised in conjunction with the 24th International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI 2021). CrossMoDA is the first large and multi-class benchmark for unsupervised cross -modality Domain Adaptation. The goal of the challenge is to segment two key brain structures involved in the follow-up and treatment planning of vestibular schwannoma (VS): the VS and the cochleas. Currently, the diagnosis and surveillance in patients with VS are commonly performed using contrast-enhanced T1 (ceT1) MR imaging. However, there is growing interest in using non-contrast imaging sequences such as high-resolution T2 (hrT2) imaging. For this reason, we established an unsupervised cross-modality segmentation benchmark. The training dataset provides annotated ceT1 scans (N=105) and unpaired non-annotated hrT2 scans (N=105). The aim was to automatically perform unilateral VS and bilateral cochlea segmentation on hrT2 scans as provided in the testing set (N=137). This problem is particularly challenging given the large intensity distribution gap across the modalities and the small volume of the structures.A total of 55 teams from 16 countries submitted predictions to the validation leaderboard. Among them, 16 teams from 9 different countries submitted their algorithm for the evaluation phase. The level of performance reached by the top-performing teams is strikingly high (best median Dice score - VS: 88.4%; Cochleas: 85.7%) and close to full supervision (median Dice score - VS: 92.5%; Cochleas: 87.7%). All top-performing methods made use of an image-to-image translation approach to transform the source-domain images into pseudo -target-domain images. A segmentation network was then trained using these generated images and the manual annotations provided for the source image.
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页数:16
相关论文
共 74 条
[1]   Unsupervised Domain Adaptation via CycleGAN for White Matter Hyperintensity Segmentation in Multicenter MR Images [J].
Alberto Palladino, Julian ;
Fernandez Slezak, Diego ;
Ferrante, Enzo .
16TH INTERNATIONAL SYMPOSIUM ON MEDICAL INFORMATION PROCESSING AND ANALYSIS, 2020, 11583
[2]  
Antonelli M, 2021, Arxiv, DOI arXiv:2106.05735
[3]  
Bakas S, 2019, Arxiv, DOI [arXiv:1811.02629, DOI 10.48550/ARXIV.1811.02629]
[4]   Data Descriptor: Advancing The Cancer Genome Atlas glioma MRI collections with expert segmentation labels and radiomic features [J].
Bakas, Spyridon ;
Akbari, Hamed ;
Sotiras, Aristeidis ;
Bilello, Michel ;
Rozycki, Martin ;
Kirby, Justin S. ;
Freymann, John B. ;
Farahani, Keyvan ;
Davatzikos, Christos .
SCIENTIFIC DATA, 2017, 4
[5]  
Baldeon-Calisto M., 2021, ARXIV
[6]  
Bateson Mathilde, 2020, Medical Image Computing and Computer Assisted Intervention - MICCAI 2020. 23rd International Conference. Proceedings. Lecture Notes in Computer Science (LNCS 12261), P490, DOI 10.1007/978-3-030-59710-8_48
[7]   Constrained Domain Adaptation for Segmentation [J].
Bateson, Mathilde ;
Kervadec, Hoel ;
Dolz, Jose ;
Lombaert, Herve ;
Ben Ayed, Ismail .
MEDICAL IMAGE COMPUTING AND COMPUTER ASSISTED INTERVENTION - MICCAI 2019, PT II, 2019, 11765 :326-334
[8]   Unsupervised Bidirectional Cross-Modality Adaptation via Deeply Synergistic Image and Feature Alignment for Medical Image Segmentation [J].
Chen, Cheng ;
Dou, Qi ;
Chen, Hao ;
Qin, Jing ;
Heng, Pheng Ann .
IEEE TRANSACTIONS ON MEDICAL IMAGING, 2020, 39 (07) :2494-2505
[9]  
Chen R., 2020, REUSING DISCRIMINATO, P8165
[10]  
Choi J., 2021, arXiv, DOI DOI 10.48550/ARXIV.2110.01607