Chromosome-level genome assembly of the Asian aspen Populus davidiana Dode

被引:7
作者
Bae, Eun-Kyung [1 ]
Kang, Min-Jeong [1 ]
Lee, Seung-Jae [2 ]
Park, Eung-Jun [1 ]
Kim, Ki-Tae [3 ]
机构
[1] Natl Inst Forest Sci, Dept Forest Bioresources, Suwon 16631, South Korea
[2] Korea Univ, Coll Life Sci & Biotechnol, Div Biotechnol, Seoul 02841, South Korea
[3] Sunchon Natl Univ, Dept Agr Life Sci, Sunchon 57922, South Korea
关键词
DE-NOVO IDENTIFICATION; ANNOTATION; SPECIATION; FAMILIES; PROGRAM; FINDER; TOOL;
D O I
10.1038/s41597-023-02350-5
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
The genome of Populus davidiana, a keystone aspen species, has been sequenced to improve our understanding of the evolutionary and functional genomics of the Populus genus. The Hi-C scaffolding genome assembly resulted in a 408.1 Mb genome with 19 pseudochromosomes. The BUSCO assessment revealed that 98.3% of the genome matched the embryophytes dataset. A total of 31,862 protein-coding sequences were predicted, of which 31,619 were functionally annotated. The assembled genome was composed of 44.9% transposable elements. These findings provide new knowledge about the characteristics of the P. davidiana genome and will facilitate comparative genomics and evolutionary research on the genus Populus.
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页数:8
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