lifex-cfd: An open-source computational fluid dynamics solver for cardiovascular applications

被引:13
|
作者
Africa, Pasquale Claudio [1 ,2 ]
Fumagalli, Ivan [2 ]
Bucelli, Michele [2 ]
Zingaro, Alberto [2 ,3 ]
Fedele, Marco [2 ]
Dede', Luca [2 ]
Quarteroni, Alfio [2 ,4 ]
机构
[1] SISSA Int Sch Adv Studies, Math Area, mathLab, ViaBonomea 265, I-34136 Trieste, Italy
[2] Politecn Milan, Dipartimento Matemat, MOX Lab Modeling & Sci Comp, Piazza Leonardo Vinci 32, I-20133 Milan, Italy
[3] ELEM Biotech SL, Pier01,Palau Mar,Placa Pau Vila 1, Barcelona 08003, Spain
[4] Ecole Polytech Fed Lausanne, Inst Math, Stn 8,Av Piccard, CH-1015 Lausanne, Switzerland
关键词
Computational fluid dynamics; Blood flow; Cardiovascular modeling; High performance computing; Open-source software; Finite element method; Numerical simulations; NAVIER-STOKES EQUATIONS; LARGE-EDDY SIMULATION; BLOOD-FLOW; NUMERICAL-SIMULATION; HEMODYNAMICS; HEART; ALGORITHMS; ARTERIES; CLOSURE; STRESS;
D O I
10.1016/j.cpc.2023.109039
中图分类号
TP39 [计算机的应用];
学科分类号
081203 ; 0835 ;
摘要
Computational fluid dynamics (CFD) is an important tool for the simulation of the cardiovascular function and dysfunction. Due to the complexity of the anatomy, the transitional regime of blood flow in the heart, and the strong mutual influence between the flow and the physical processes involved in the heart function, the development of accurate and efficient CFD solvers for cardiovascular flows is still a challenging task. In this paper we present lifex-cfd, an open-source CFD solver for cardiovascular simulations based on the lifex finite element library, written in modern C++ and exploiting distributed memory parallelism. We model blood flow in both physiological and pathological conditions via the incompressible Navier-Stokes equations, accounting for moving cardiac valves, moving domains, and transition-to-turbulence regimes. In this paper, we provide an overview of the underlying mathematical formulation, numerical discretization, implementation details and examples on how to use lifex-cfd. We verify the code through rigorous convergence analyses, and we show its almost ideal parallel speedup. We demonstrate the accuracy and reliability of the numerical methods implemented through a series of idealized and patient-specific vascular and cardiac simulations, in different physiological flow regimes. The lifex-cfd source code is available under the LGPLv3 license, to ensure its accessibility and transparency to the scientific community, and to facilitate collaboration and further developments.
引用
收藏
页数:18
相关论文
共 50 条
  • [1] PUFoam: A novel open-source CFD solver for the simulation of polyurethane foams
    Karimi, M.
    Droghetti, H.
    Marchisio, D. L.
    COMPUTER PHYSICS COMMUNICATIONS, 2017, 217 : 138 - 148
  • [2] A verified and validated moving domain computational fluid dynamics solver with applications to cardiovascular flows
    Kjeldsberg, Henrik A.
    Sundnes, Joakim
    Valen-Sendstad, Kristian
    INTERNATIONAL JOURNAL FOR NUMERICAL METHODS IN BIOMEDICAL ENGINEERING, 2023, 39 (06)
  • [3] Applications of computational fluid dynamics to congenital heart diseases: a practical review for cardiovascular professionals
    Rigatelli, Gianluca
    Chiastra, Claudio
    Pennati, Giancarlo
    Dubini, Gabriele
    Migliavacca, Francesco
    Zuin, Marco
    EXPERT REVIEW OF CARDIOVASCULAR THERAPY, 2021, 19 (10) : 907 - 916
  • [4] CRIMSON: An open-source software framework for cardiovascular integrated modelling and simulation
    Arthurs, Christopher J.
    Khlebnikov, Rostislav
    Melville, Alex
    Marcan, Marija
    Gomez, Alberto
    Dillon-Murphy, Desmond
    Cuomo, Federica
    Silva Vieira, Miguel
    Schollenberger, Jonas
    Lynch, Sabrina R.
    Tossas-Betancourt, Christopher
    Iyer, Kritika
    Hopper, Sara
    Livingston, Elizabeth
    Youssefi, Pouya
    Noorani, Alia
    Ben Ahmed, Sabrina
    Nauta, Foeke J. H.
    van Bakel, Theodorus M. J.
    Ahmed, Yunus
    van Bakel, Petrus A. J.
    Mynard, Jonathan
    Di Achille, Paolo
    Gharahi, Hamid
    Lau, Kevin D.
    Filonova, Vasilina
    Aguirre, Miquel
    Nama, Nitesh
    Xiao, Nan
    Baek, Seungik
    Garikipati, Krishna
    Sahni, Onkar
    Nordsletten, David
    Figueroa, C. Alberto
    PLOS COMPUTATIONAL BIOLOGY, 2021, 17 (05)
  • [5] A Re-Engineered Software Interface and Workflow for the Open-Source SimVascular Cardiovascular Modeling Package
    Lan, Hongzhi
    Updegrove, Adam
    Wilson, Nathan M.
    Maher, Gabriel D.
    Shadden, Shawn C.
    Marsden, Alison L.
    JOURNAL OF BIOMECHANICAL ENGINEERING-TRANSACTIONS OF THE ASME, 2018, 140 (02):
  • [6] Advances in the application of computational fluid dynamics in cardiovascular flow
    Kumar, Nitesh
    Ganesha, A.
    Girish, H.
    Kumar, Shiva
    Shenoy, B. Gowrava
    COGENT ENGINEERING, 2023, 10 (01):
  • [7] Stabilization of an open-source finite-volume solver for viscoelastic fluid flows
    Pimenta, F.
    Alves, M. A.
    JOURNAL OF NON-NEWTONIAN FLUID MECHANICS, 2017, 239 : 85 - 104
  • [8] Open-source modelling of aerosol dynamics and computational fluid dynamics: Bipolar and unipolar diffusion charging and photoelectric charging
    Woo, Mino
    Schriefl, Mario A.
    Knoll, Markus
    Boies, Adam M.
    Stettler, Marc E. J.
    Hochgreb, Simone
    Nishida, Robert T.
    COMPUTER PHYSICS COMMUNICATIONS, 2022, 278
  • [9] Open-source modelling of aerosol dynamics and computational fluid dynamics: Nodal method for nucleation, coagulation, and surface growth
    Woo, Mino
    Nishida, Robert T.
    Schriefl, Mario A.
    Stettler, Marc E. J.
    Boies, Adam M.
    COMPUTER PHYSICS COMMUNICATIONS, 2021, 261
  • [10] Optimization of Cardiovascular Stent Design Using Computational Fluid Dynamics
    Gundert, Timothy J.
    Marsden, Alison L.
    Yang, Weiguang
    LaDisa, John F., Jr.
    JOURNAL OF BIOMECHANICAL ENGINEERING-TRANSACTIONS OF THE ASME, 2012, 134 (01):