Identification and validation of a novel prognostic circadian rhythm-related gene signature for stomach adenocarcinoma

被引:1
作者
Qian, Lei [1 ]
Ding, Xiaochen [1 ]
Fan, Xiaoyan [1 ]
Li, Shisen [2 ]
Qiao, Yihuan [3 ]
Zhang, Xiaoqun [4 ]
Li, Jipeng [1 ,2 ]
机构
[1] Fourth Mil Med Univ, Xijing Hosp, Dept Expt Surg, Xian, Peoples R China
[2] Air Force Mil Med Univ, Xijing Hosp Digest Dis, Dept Digest Surg, Changle West Rd 127, Xian 710032, Peoples R China
[3] Xian Med Univ, Sch Clin Med, Xian, Peoples R China
[4] Shaanxi Prov Hosp Chinese Med, Dept Pharm, Xian 710003, Peoples R China
关键词
Bioinformatics; chronotherapy; circadian rhythm; prognostic model; stomach adenocarcinoma; HISTONE METHYLTRANSFERASE ACTIVITY; REV-ERB-ALPHA; CELL-PROLIFERATION; CANCER CELLS; EXPRESSION; SOX14; PER1; TRANSCRIPTION; REGULATORS; SURVIVAL;
D O I
10.1080/07420528.2023.2205936
中图分类号
Q [生物科学];
学科分类号
07 ; 0710 ; 09 ;
摘要
Circadian rhythm genes were reported to be strongly associated with the development and prognosis of circadian rhythm disorders related to stomach adenocarcinoma (STAD), which is one of the most prevalent cancers. This study aimed to identify a circadian rhythm-related gene signature that could help predict STAD outcome. Using bioinformatics analysis approaches, 105 genes were examined in 350 patients with STAD. Overall, six hub-type circadian rhythm-associated genes (GNA11, PER1, SOX14, EZH2, MAGED1, and NR1D1) were identified using univariate and multivariate Cox regression analyses. These genes were then used to build a genetic predictive model, which was further validated using a publicly available dataset (GSE26899). Overall, genes associated with the circadian rhythm were found to be substantially correlated with the characteristics of the STAD patients (grade, sex, and M stage). In addition, the circadian rhythm-related gene signature was significantly associated with the MAPK and Notch signaling pathways, which are known risk factors for poorer STAD outcome. Taken together, these findings suggest that the herein proposed prognostic model based on six circadian rhythm-associated genes may have predictive value and potential application for clinical decision-making and for personalized treatment of STAD.
引用
收藏
页码:744 / 758
页数:15
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