Identification and validation of a novel NK cells-related signature to predict prognosis and immune microenvironment in LUAD

被引:0
作者
Song, Chenghu [1 ]
Liu, Weici [1 ]
Jiang, Guanyu [1 ]
He, Zhao [1 ]
Wang, Ruixin [1 ]
Wang, Xiaokun [1 ]
Chen, Ruo [1 ]
Mao, Wenjun [1 ]
Zhu, Shaojin [2 ]
机构
[1] Nanjing Med Univ, Wuxi Peoples Hosp, Wuxi Med Ctr, Wuxi Peoples Hosp,Dept Anesthesiol, Wuxi 214023, Peoples R China
[2] Yijishan Hosp, Affiliated Hosp 1, Wannan Med Coll, Dept Thorac Surg, Wuhu, Peoples R China
关键词
NK cells; TCGA; Lung adenocarcinoma; Immunity; Prediction model; RECEPTOR NKP30; LUNG-CANCER; LIGAND; FUTURE;
D O I
10.1016/j.imbio.2023.152751
中图分类号
R392 [医学免疫学]; Q939.91 [免疫学];
学科分类号
100102 ;
摘要
Background: The prevalence and fatality rates of lung cancer are experiencing a rapid escalation. Natural Killer (NK) cells have been established to have a crucial role in both tumor initiation and progression. Nevertheless, uncertainties persist regarding their precise implications in the prognosis of LUAD.Methods: The data were obtained from reputable sources, such as the Cancer Genome Atlas (TCGA), Gene Expression Omnibus (GEO) database, and our internally generated sequencing data. Utilizing the TCGA data as a background, we selected intersecting genes, validated by cluster analysis, to establish a Cox model and validated it using the GEO datasets. Furthermore, we conducted extensive analyses to investigate the significance of potential biomarkers in relation to immune cell infiltration, single-cell data, differential gene expression, and drug sensitivity.Results: 67 immune-related genes associated with NK cells (NK-IRGs) were identified in the TCGA datasets, whose research potential was demonstrated by cluster analysis. A prognostic signature was identified utilizing the univariate and multivariate Cox model, resulting in the identification of five genes, which was validated using GEO datasets. Additionally, the nomogram's calibration curve demonstrated exceptional concordance between the projected and actual survival rates. Subsequent investigations uncovered that this prognostic signature demonstrated its independence as a risk factor. Notably, in the low-risk group, NK cells exhibited elevated levels of immune checkpoint molecules, indicating heightened sensitivity to immune therapy. These findings highlight the potential of utilizing this signature as a valuable tool in the selection of patients who could benefit from targeted immune interventions.
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页数:14
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共 45 条
  • [1] Naturally occurring p16Ink4a-positive cells shorten healthy lifespan
    Baker, Darren J.
    Childs, Bennett G.
    Durik, Matej
    Wijers, Melinde E.
    Sieben, Cynthia J.
    Zhong, Jian
    Saltness, Rachel A.
    Jeganathan, Karthik B.
    Verzosa, Grace Casaclang
    Pezeshki, Abdulmohammad
    Khazaie, Khashayarsha
    Miller, Jordan D.
    van Deursen, Jan M.
    [J]. NATURE, 2016, 530 (7589) : 184 - +
  • [2] Role of SNTA1 in Rac1 activation, modulation of ROS generation, and migratory potential of human breast cancer cells
    Bhat, H. F.
    Baba, R. A.
    Adams, M. E.
    Khanday, F. A.
    [J]. BRITISH JOURNAL OF CANCER, 2014, 110 (03) : 706 - 714
  • [3] ImmPort: disseminating data to the public for the future of immunology
    Bhattacharya, Sanchita
    Andorf, Sandra
    Gomes, Linda
    Dunn, Patrick
    Schaefer, Henry
    Pontius, Joan
    Berger, Patty
    Desborough, Vince
    Smith, Tom
    Campbell, John
    Thomson, Elizabeth
    Monteiro, Ruth
    Guimaraes, Patricia
    Walters, Bryan
    Wiser, Jeff
    Butte, Atul J.
    [J]. IMMUNOLOGIC RESEARCH, 2014, 58 (2-3) : 234 - 239
  • [4] The B7 family member B7-H6 is a tumor cell ligand for the activating natural killer cell receptor NKp30 in humans
    Brandt, Cameron S.
    Baratin, Myriam
    Yi, Eugene C.
    Kennedy, Jacob
    Gao, Zeren
    Fox, Brian
    Haldeman, Betty
    Ostrander, Craig D.
    Kaifu, Tomonori
    Chabannon, Christian
    Moretta, Alessandro
    West, Robert
    Xu, WenFeng
    Vivier, Eric
    Levin, Steven D.
    [J]. JOURNAL OF EXPERIMENTAL MEDICINE, 2009, 206 (07) : 1495 - 1503
  • [5] Adjuvant chemotherapy for resected early-stage non-small cell lung cancer
    Burdett, Sarah
    Pignon, Jean Pierre
    Tierney, Jayne
    Tribodet, Helene
    Stewart, Lesley
    Le Pechoux, Cecile
    Auperin, Anne
    Le Chevalier, Thierry
    Stephens, Richard J.
    Arriagada, Rodrigo
    Higgins, Julian P. T.
    Johnson, David H.
    Van Meerbeeck, Jan
    Parmar, Mahesh K. B.
    Souhami, Robert L.
    Bergman, Bengt
    Douillard, Jean-Yves
    Dunant, Ariane
    Endo, Chiaki
    Girling, David
    Kato, Harubumi
    Keller, Steven M.
    Kimura, Hideki
    Knuuttila, Aija
    Kodama, Ken
    Komaki, Ritsuko
    Kris, Mark G.
    Lad, Thomas
    Mineo, Tommaso
    Piantadosi, Steven
    Rosell, Rafael
    Scagliotti, Giorgio
    Seymour, Lesley K.
    Shepherd, Frances A.
    Sylvester, Richard
    Tada, Hirohito
    Tanaka, Fumihiro
    Torri, Valter
    Waller, David
    Liang, Ying
    [J]. COCHRANE DATABASE OF SYSTEMATIC REVIEWS, 2015, (03):
  • [6] RAET1E2, a soluble isoform of the UL16-binding protein RAET1E produced by tumor cells, inhibits NKG2D-mediated NK cytotoxicity
    Cao, Wei
    Xi, Xueyan
    Hao, Zhiyong
    Li, Wenjing
    Kong, Yan
    Cui, Lianxian
    Ma, Chi
    Ba, Denian
    He, Wei
    [J]. JOURNAL OF BIOLOGICAL CHEMISTRY, 2007, 282 (26) : 18922 - 18928
  • [7] Circulating innate immune markers and outcomes in treatment-naive advanced non-small cell lung cancer patients
    Charrier, M.
    Mezquita, L.
    Lueza, B.
    Dupraz, L.
    Planchard, D.
    Remon, J.
    Caramella, C.
    Cassard, L.
    Boselli, L.
    Reiners, K. S.
    Von Strandmann, E. Pogge
    Rusakiewicz, S.
    Ferrara, R.
    Duchemann, B.
    Naigeon, M.
    Pignon, J. P.
    Besse, B.
    Chaput, N.
    [J]. EUROPEAN JOURNAL OF CANCER, 2019, 108 : 88 - 96
  • [8] Annual report on status of cancer in China, 2010
    Chen, Wanqing
    Zheng, Rongshou
    Zhang, Siwei
    Zhao, Ping
    Zeng, Hongmei
    Zou, Xiaonong
    He, Jie
    [J]. CHINESE JOURNAL OF CANCER RESEARCH, 2014, 26 (01) : 48 - 58
  • [9] MICA/B and ULBP1 NKG2D ligands are independent predictors of good prognosis in cervical cancer
    Cho, Hanbyoul
    Chung, Joon-Yong
    Kim, Sunghoon
    Braunschweig, Till
    Kang, Tae Heung
    Kim, Jennie
    Chung, Eun Joo
    Hewitt, Stephen M.
    Kim, Jae-Hoon
    [J]. BMC CANCER, 2014, 14
  • [10] Cell death-based treatment of lung adenocarcinoma
    Denisenko, Tatiana V.
    Budkevich, Inna N.
    Zhivotovsky, Boris
    [J]. CELL DEATH & DISEASE, 2018, 9