Exploring breast cancer exosomes for novel biomarkers of potential diagnostic and prognostic importance

被引:6
|
作者
Alagundagi, Dhananjay B. B. [1 ]
Ghate, Sudeep D. D. [2 ]
Rajendra, Vinay Kumar J. [3 ]
Gollapalli, Pavan [2 ]
Shetty, Vijith V. V. [3 ]
D'Souza, Caren [4 ]
Shetty, Praveenkumar [5 ]
Patil, Prakash [1 ]
机构
[1] NITTE Deemed Univ, K S Hegde Med Acad, Cent Res Lab, Mangaluru 575018, Karnataka, India
[2] NITTE Deemed Univ, K S Hegde Med Acad, Ctr Bioinformat & Biostat, Mangaluru 575018, Karnataka, India
[3] NITTE Deemed Univ, Justice K S Hegde Charitable Hosp, K S Hegde Med Acad, Dept Oncol, Mangaluru 575018, Karnataka, India
[4] NITTE Deemed Univ, Justice K S Hegde Charitable Hosp, K S Hegde Med Acad, Dept Gen Surg, Mangaluru 575018, Karnataka, India
[5] NITTE Deemed Univ, K S Hegde Med Acad, Cent Res Lab, Dept Biochem, Mangaluru 575018, Karnataka, India
关键词
Chaperone; Chaperonin; Exosomes; Hub genes; Network biology; Protein-protein interaction; GENE-EXPRESSION; HSP90; TELOMERASE; INHIBITION; SURVIVAL; ENOLASE-1; PROTEINS; TARGET;
D O I
10.1007/s13205-022-03422-w
中图分类号
Q81 [生物工程学(生物技术)]; Q93 [微生物学];
学科分类号
071005 ; 0836 ; 090102 ; 100705 ;
摘要
The comprehensive bioinformatics analysis of breast cancer exosomes revealed that HSP90AA1, CCT2, and ENO1 were novel hub genes in the giant protein-protein interaction network of 110 exosomal proteins. Exosomes and their cargo such as discrete proteins, nucleic acids, and lipids are having potential role in the pathophysiology of breast cancer (BC). This study showed that the identified hub genes were particularly abundant in GO and KEGG pathways relevant to the positive regulation of telomerase. In addition, these hub genes were found to be considerably overexpressed in breast adenocarcinoma patients compared to healthy controls, and further, this overexpression is linked to the poor prognosis in BC patients. Furthermore, the ROC analysis revealed that CCT2 gene has strong diagnostic and prognostic value for BC. Additionally, this in silico analysis found that the anticancer agents and HSP90 inhibitors such as ganetespib, retaspimycin, and tanespimycin would have considerable potential in the treatment of BC. Overall, this study findings imply that HSP90AA1, a molecular chaperon and CCT2, a chaperonin would serve as diagnostic and prognostic biomarkers, respectively, for BC. However, these findings need to be further confirmed by laboratory and clinical studies for validating their potential applications.
引用
收藏
页数:11
相关论文
共 50 条
  • [21] A novel strategy to identify candidate diagnostic and prognostic biomarkers for gastric cancer
    Lei Liu
    Honglin Pang
    Qiao He
    Biran Pan
    Xiaobin Sun
    Jing Shan
    Liping Wu
    Kaiwen Wu
    Xue Yao
    Yuanbiao Guo
    Cancer Cell International, 21
  • [22] A novel strategy to identify candidate diagnostic and prognostic biomarkers for gastric cancer
    Liu, Lei
    Pang, Honglin
    He, Qiao
    Pan, Biran
    Sun, Xiaobin
    Shan, Jing
    Wu, Liping
    Wu, Kaiwen
    Yao, Xue
    Guo, Yuanbiao
    CANCER CELL INTERNATIONAL, 2021, 21 (01)
  • [23] Exosomes: Diagnostic Biomarkers and Therapeutic Delivery Vehicles for Cancer
    Jiang, Liangdi
    Gu, Yongwei
    Du, Yue
    Liu, Jiyong
    MOLECULAR PHARMACEUTICS, 2019, 16 (08) : 3333 - 3349
  • [24] MicroRNAs as potential diagnostic and prognostic biomarkers in melanoma
    Mirzaei, Hamed
    Gholamin, Sharareh
    Shahidsales, Soodabeh
    Sahebkar, Amirhossein
    Jaafari, Mahmoud Reza
    Mirzaei, Hamid Reza
    Hassanian, Seyed Mahdi
    Avan, Amir
    EUROPEAN JOURNAL OF CANCER, 2016, 53 : 25 - 32
  • [25] Exploring a novel four-gene system as a diagnostic and prognostic biomarker for triple-negative breast cancer, using clinical variables
    Ali, Faisal
    Iqbal, Azhar
    Azhar, Iqra
    Qayyum, Adiba
    Hassan, Syed Ali
    Al Hasan, Md. Sakib
    Jawi, Motasim
    Hassan, Hesham M.
    Al-Emam, Ahmed
    Sajid, Muhammad
    COMPUTATIONAL BIOLOGY AND CHEMISTRY, 2024, 113
  • [26] Serum Lipidomic Profiling in Breast Cancer to Identify Screening, Diagnostic, and Prognostic Biomarkers
    Fichtali, Karima
    Bititi, Amine
    Elghanmi, Adil
    Ghazi, Bouchra
    BIORESEARCH OPEN ACCESS, 2020, 9 (01): : 1 - 6
  • [27] Mitochondrial DNA and MitomiR Variations in Pancreatic Cancer: Potential Diagnostic and Prognostic Biomarkers
    Moro, Loredana
    INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES, 2021, 22 (18)
  • [28] Autophagy-related genes are potential diagnostic and prognostic biomarkers in prostate cancer
    Cheng, Yifei
    Qi, Feng
    Li, Lu
    Qin, Zongshi
    Li, Xiao
    Wang, Xinwei
    TRANSLATIONAL ANDROLOGY AND UROLOGY, 2020, 9 (06) : 2616 - 2628
  • [29] MicroRNAs: Novel Diagnostic and Prognostic Biomarkers in Atherosclerosis
    Siasos, Gerasimos
    Kollia, Christina
    Tsigkou, Vasiliki
    Basdra, Efthimia K.
    Lymperi, Maria
    Oikonomou, Evangelos
    Kokkou, Eleni
    Korompelis, Porfyrios
    Papavassiliou, Athanasios G.
    CURRENT TOPICS IN MEDICINAL CHEMISTRY, 2013, 13 (13) : 1503 - 1517
  • [30] Identification of potential diagnostic and prognostic biomarkers for sepsis based on machine learning
    Ke, Li
    Gao, Han
    Hu, Chang
    Zhang, Jiahao
    Zhao, Qiuyue
    Sun, Zhongyi
    Peng, Zhiyong
    COMPUTATIONAL AND STRUCTURAL BIOTECHNOLOGY JOURNAL, 2023, 21 : 2316 - 2331