Exploring breast cancer exosomes for novel biomarkers of potential diagnostic and prognostic importance

被引:6
|
作者
Alagundagi, Dhananjay B. B. [1 ]
Ghate, Sudeep D. D. [2 ]
Rajendra, Vinay Kumar J. [3 ]
Gollapalli, Pavan [2 ]
Shetty, Vijith V. V. [3 ]
D'Souza, Caren [4 ]
Shetty, Praveenkumar [5 ]
Patil, Prakash [1 ]
机构
[1] NITTE Deemed Univ, K S Hegde Med Acad, Cent Res Lab, Mangaluru 575018, Karnataka, India
[2] NITTE Deemed Univ, K S Hegde Med Acad, Ctr Bioinformat & Biostat, Mangaluru 575018, Karnataka, India
[3] NITTE Deemed Univ, Justice K S Hegde Charitable Hosp, K S Hegde Med Acad, Dept Oncol, Mangaluru 575018, Karnataka, India
[4] NITTE Deemed Univ, Justice K S Hegde Charitable Hosp, K S Hegde Med Acad, Dept Gen Surg, Mangaluru 575018, Karnataka, India
[5] NITTE Deemed Univ, K S Hegde Med Acad, Cent Res Lab, Dept Biochem, Mangaluru 575018, Karnataka, India
关键词
Chaperone; Chaperonin; Exosomes; Hub genes; Network biology; Protein-protein interaction; GENE-EXPRESSION; HSP90; TELOMERASE; INHIBITION; SURVIVAL; ENOLASE-1; PROTEINS; TARGET;
D O I
10.1007/s13205-022-03422-w
中图分类号
Q81 [生物工程学(生物技术)]; Q93 [微生物学];
学科分类号
071005 ; 0836 ; 090102 ; 100705 ;
摘要
The comprehensive bioinformatics analysis of breast cancer exosomes revealed that HSP90AA1, CCT2, and ENO1 were novel hub genes in the giant protein-protein interaction network of 110 exosomal proteins. Exosomes and their cargo such as discrete proteins, nucleic acids, and lipids are having potential role in the pathophysiology of breast cancer (BC). This study showed that the identified hub genes were particularly abundant in GO and KEGG pathways relevant to the positive regulation of telomerase. In addition, these hub genes were found to be considerably overexpressed in breast adenocarcinoma patients compared to healthy controls, and further, this overexpression is linked to the poor prognosis in BC patients. Furthermore, the ROC analysis revealed that CCT2 gene has strong diagnostic and prognostic value for BC. Additionally, this in silico analysis found that the anticancer agents and HSP90 inhibitors such as ganetespib, retaspimycin, and tanespimycin would have considerable potential in the treatment of BC. Overall, this study findings imply that HSP90AA1, a molecular chaperon and CCT2, a chaperonin would serve as diagnostic and prognostic biomarkers, respectively, for BC. However, these findings need to be further confirmed by laboratory and clinical studies for validating their potential applications.
引用
收藏
页数:11
相关论文
共 50 条
  • [1] Exploring breast cancer exosomes for novel biomarkers of potential diagnostic and prognostic importance
    Dhananjay B. Alagundagi
    Sudeep D. Ghate
    Vinay Kumar J. Rajendra
    Pavan Gollapalli
    Vijith V. Shetty
    Caren D’Souza
    Praveenkumar Shetty
    Prakash Patil
    3 Biotech, 2023, 13
  • [2] Circulating microRNAs in breast cancer: novel diagnostic and prognostic biomarkers
    Hamam, Rimi
    Hamam, Dana
    Alsaleh, Khalid A.
    Kassem, Moustapha
    Zaher, Waleed
    Alfayez, Musaad
    Aldahmash, Abdullah
    Alajez, Nehad M.
    CELL DEATH & DISEASE, 2017, 8 : e3045 - e3045
  • [3] Current Progresses of Exosomes as Cancer Diagnostic and Prognostic Biomarkers
    Huang, Tao
    Deng, Chu-Xia
    INTERNATIONAL JOURNAL OF BIOLOGICAL SCIENCES, 2019, 15 (01): : 1 - 11
  • [4] Exosomes as diagnostic biomarkers in cancer
    Kim, Jung-Hee
    Kim, Eunjoo
    Lee, Mi Young
    MOLECULAR & CELLULAR TOXICOLOGY, 2018, 14 (02) : 113 - 122
  • [5] Exosomes as diagnostic and predictive biomarkers in lung cancer
    Reclusa, Pablo
    Taverna, Simona
    Pucci, Marzia
    Durendez, Elena
    Calabuig, Silvia
    Manca, Paolo
    Jose Serrano, Maria
    Sober, Laure
    Pauwels, Patrick
    Russo, Antonio
    Rolfo, Christian
    JOURNAL OF THORACIC DISEASE, 2017, 9 : S1373 - S1382
  • [6] Identification of potential diagnostic and prognostic biomarkers for breast cancer based on gene expression omnibus
    Zhang, Xiong
    Mi, Zhi-Hui
    WORLD JOURNAL OF CLINICAL CASES, 2023, 11 (27) : 6344 - 6362
  • [7] Identification of potential diagnostic and prognostic biomarkers for prostate cancer
    Zhang, Qiang
    Yin, Xiujuan
    Pan, Zhiwei
    Cao, Yingying
    Han, Shaojie
    Gao, Guojun
    Gao, Zhiqin
    Pan, Zhifang
    Feng, Weiguo
    ONCOLOGY LETTERS, 2019, 18 (04) : 4237 - 4245
  • [8] Identification of Potential Diagnostic and Prognostic Biomarkers for Gastric Cancer Based on Bioinformatic Analysis
    Niu, Xiaoji
    Ren, Liman
    Hu, Aiyan
    Zhang, Shuhui
    Qi, Hongjun
    FRONTIERS IN GENETICS, 2022, 13
  • [9] Grade-specific diagnostic and prognostic biomarkers in breast cancer
    Jayanthi, V. S. P. K. Sankara Aditya
    Das, Asim Bikas
    Saxena, Urmila
    GENOMICS, 2020, 112 (01) : 388 - 396
  • [10] Diagnostic, prognostic, and predictive biomarkers in pancreatic cancer
    Winter, Jordan M.
    Yeo, Charles J.
    Brody, Jonathan R.
    JOURNAL OF SURGICAL ONCOLOGY, 2013, 107 (01) : 15 - 22