Prediction of anticancer drug resistance using a 3D microfluidic bladder cancer model combined with convolutional neural network-based image analysis

被引:4
作者
Tak, Sungho [1 ,2 ]
Han, Gyeongjin [1 ]
Leem, Sun-Hee [3 ,4 ]
Lee, Sang-Yeop [1 ]
Paek, Kyurim [5 ]
Kim, Jeong Ah [5 ,6 ,7 ]
机构
[1] Korea Basic Sci Inst, Res Ctr Bioconvergence Anal, Cheongju, South Korea
[2] Chungnam Natl Univ, Grad Sch Analyt Sci & Technol, Daejeon, South Korea
[3] Dong A Univ, Dept Biomed Sci, Busan, South Korea
[4] Dong A Univ, Grad Sch, Dept Hlth Sci, Busan, South Korea
[5] Korea Basic Sci Inst, Ctr Sci Instrumentat, Daejeon, South Korea
[6] Univ Sci & Technol, Dept Bioanalyt Sci, Daejeon, South Korea
[7] Chung Ang Univ, Chung Ang Univ Hosp, Coll Med, Seoul, South Korea
基金
新加坡国家研究基金会;
关键词
bladder cancer; drug resistance; organ-on-a-chip; convolutional neural network; step decay learning rate; CHIP;
D O I
10.3389/fbioe.2023.1302983
中图分类号
Q81 [生物工程学(生物技术)]; Q93 [微生物学];
学科分类号
071005 ; 0836 ; 090102 ; 100705 ;
摘要
Bladder cancer is the most common urological malignancy worldwide, and its high recurrence rate leads to poor survival outcomes. The effect of anticancer drug treatment varies significantly depending on individual patients and the extent of drug resistance. In this study, we developed a validation system based on an organ-on-a-chip integrated with artificial intelligence technologies to predict resistance to anticancer drugs in bladder cancer. As a proof-of-concept, we utilized the gemcitabine-resistant bladder cancer cell line T24 with four distinct levels of drug resistance (parental, early, intermediate, and late). These cells were co-cultured with endothelial cells in a 3D microfluidic chip. A dataset comprising 2,674 cell images from the chips was analyzed using a convolutional neural network (CNN) to distinguish the extent of drug resistance among the four cell groups. The CNN achieved 95.2% accuracy upon employing data augmentation and a step decay learning rate with an initial value of 0.001. The average diagnostic sensitivity and specificity were 90.5% and 96.8%, respectively, and all area under the curve (AUC) values were over 0.988. Our proposed method demonstrated excellent performance in accurately identifying the extent of drug resistance, which can assist in the prediction of drug responses and in determining the appropriate treatment for bladder cancer patients.
引用
收藏
页数:12
相关论文
共 61 条
[1]   Characterization of three-dimensional cancer cell migration in mixed collagen-Matrigel scaffolds using microfluidics and image analysis [J].
Anguiano, Maria ;
Castilla, Carlos ;
Maska, Martin ;
Ederra, Cristina ;
Pelaez, Rafael ;
Morales, Xabier ;
Munoz-Arrieta, Gorka ;
Mujika, Maite ;
Kozubek, Michal ;
Munoz-Barrutia, Arrate ;
Rouzaut, Ana ;
Arana, Sergio ;
Manuel Garcia-Aznar, Jose ;
Ortiz-de-Solorzano, Carlos .
PLOS ONE, 2017, 12 (02)
[2]   Joint analysis of expression levels and histological images identifies genes associated with tissue morphology [J].
Ash, Jordan T. ;
Darnell, Gregory ;
Munro, Daniel ;
Engelhardt, Barbara E. .
NATURE COMMUNICATIONS, 2021, 12 (01)
[3]   Artificial intelligence: A promising frontier in bladder cancer diagnosis and outcome prediction [J].
Borhani, Soheila ;
Borhani, Reza ;
Kajdacsy-Balla, Andre .
CRITICAL REVIEWS IN ONCOLOGY HEMATOLOGY, 2022, 171
[4]   Recursive Deep Prior Video: A super resolution algorithm for time-lapse microscopy of organ-on-chip experiments [J].
Cascarano, Pasquale ;
Comes, Maria Colomba ;
Mencattini, Arianna ;
Parrini, Maria Carla ;
Piccolomini, Elena Loli ;
Martinelli, Eugenio .
MEDICAL IMAGE ANALYSIS, 2021, 72
[5]   Pan-cancer integrative histology-genomic analysis via multimodal deep learning [J].
Chen, Richard J. ;
Lu, Ming Y. ;
Williamson, Drew F. K. ;
Chen, Tiffany Y. ;
Lipkova, Jana ;
Noor, Zahra ;
Shaban, Muhammad ;
Shady, Maha ;
Williams, Mane ;
Joo, Bumjin ;
Mahmood, Faisal .
CANCER CELL, 2022, 40 (08) :865-+
[6]   Identifying non-muscle-invasive and muscle-invasive bladder cancer based on blood serum surface-enhanced Raman spectroscopy [J].
Chen, Shuo ;
Zhu, Shanshan ;
Cui, Xiaoyu ;
Xu, Wenbin ;
Kong, Chuize ;
Zhang, Zhe ;
Qian, Wei .
BIOMEDICAL OPTICS EXPRESS, 2019, 10 (07) :3533-3544
[7]   Analyzing angiogenesis on a chip using deep learning-based image processing [J].
Choi, Dong-Hee ;
Liu, Hui-Wen ;
Jung, Yong Hun ;
Ahn, Jinchul ;
Kim, Jin-A ;
Oh, Dongwoo ;
Jeong, Yeju ;
Kim, Minseop ;
Yoon, Hongjin ;
Kang, Byengkyu ;
Hong, Eunsol ;
Song, Euijeong ;
Chung, Seok .
LAB ON A CHIP, 2023, 23 (03) :475-484
[8]   Xception: Deep Learning with Depthwise Separable Convolutions [J].
Chollet, Francois .
30TH IEEE CONFERENCE ON COMPUTER VISION AND PATTERN RECOGNITION (CVPR 2017), 2017, :1800-1807
[9]  
Chollet Francois., 2021, DEEP LEARNING PYTHON
[10]   Image analysis with deep learning to predict breast cancer grade, ER status, histologic subtype, and intrinsic subtype [J].
Couture, Heather D. ;
Williams, Lindsay A. ;
Geradts, Joseph ;
Nyante, Sarah J. ;
Butler, Ebonee N. ;
Marron, J. S. ;
Perou, Charles M. ;
Troester, Melissa A. ;
Niethammer, Marc .
NPJ BREAST CANCER, 2018, 4