The multiple activations in budding yeast S-phase checkpoint are Poisson processes

被引:0
作者
Gao, Xin [1 ]
Zhou, Peijie [2 ]
Li, Fangting [1 ]
机构
[1] Peking Univ, Ctr Quantitat Biol, Sch Phys, Beijing 100871, Peoples R China
[2] Univ Calif Irvine, Dept Math, Irvine, CA 92697 USA
来源
PNAS NEXUS | 2023年 / 2卷 / 11期
关键词
budding yeast; S-phase checkpoint; stochasticity; Poisson activation process; DNA-REPLICATION; PHOSPHORYLATION; KINASE; NOISE; SPECIFICITY; HYDROXYUREA; MECHANISM;
D O I
10.1093/pnasnexus/pgad342
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
Eukaryotic cells activate the S-phase checkpoint signal transduction pathway in response to DNA replication stress. Affected by the noise in biochemical reactions, such activation process demonstrates cell-to-cell variability. Here, through the analysis of microfluidics-integrated time-lapse imaging, we found multiple S-phase checkpoint activations in a certain budding yeast cell cycle. Yeast cells not only varied in their activation moments but also differed in the number of activations within the cell cycle, resulting in a stochastic multiple activation process. By investigating dynamics at the single-cell level, we showed that stochastic waiting times between consecutive activations are exponentially distributed and independent from each other. Finite DNA replication time provides a robust upper time limit to the duration of multiple activations. The mathematical model, together with further experimental evidence from the mutant strain, revealed that the number of activations under different levels of replication stress agreed well with Poisson distribution. Therefore, the activation events of S-phase checkpoint meet the criterion of Poisson process during DNA replication. In sum, the observed Poisson activation process may provide new insights into the complex stochastic dynamics of signal transduction pathways.
引用
收藏
页数:12
相关论文
共 50 条
  • [1] Stochasticity Triggers Activation of the S-phase Checkpoint Pathway in Budding Yeast
    Zhou, Peijie
    Gao, Xin
    Li, Xiaoli
    Li, Linxi
    Niu, Caoyuan
    Ouyang, Qi
    Lou, Huiqiang
    Li, Tiejun
    Li, Fangting
    PHYSICAL REVIEW X, 2021, 11 (01)
  • [2] S-phase DNA damage checkpoint in budding yeast
    Foiani, M
    Ferrari, M
    Liberi, G
    Lopes, M
    Lucca, C
    Marini, F
    Pellicioli, A
    Falconi, MM
    Plevani, P
    BIOLOGICAL CHEMISTRY, 1998, 379 (8-9) : 1019 - 1023
  • [3] Multiple Functions of the S-Phase Checkpoint Mediator
    Tanaka, Katsunori
    BIOSCIENCE BIOTECHNOLOGY AND BIOCHEMISTRY, 2010, 74 (12) : 2367 - 2373
  • [4] Genome-wide replication profiles of S-phase checkpoint mutants reveal fragile sites in yeast
    Raveendranathan, Miruthubashini
    Chattopadhyay, Sharbani
    Bolon, Yung-Tsi
    Haworth, Justin
    Clarke, Duncan J.
    Bielinsky, Anja-Katrin
    EMBO JOURNAL, 2006, 25 (15) : 3627 - 3639
  • [5] Four pillars of the S-phase checkpoint
    Zou, Lee
    GENES & DEVELOPMENT, 2013, 27 (03) : 227 - 233
  • [6] S-Phase Cyclin-Dependent Kinases Promote Sister Chromatid Cohesion in Budding Yeast
    Hsu, W. -S.
    Erickson, S. L.
    Tsai, H. -J.
    Andrews, C. A.
    Vas, A. C.
    Clarke, D. J.
    MOLECULAR AND CELLULAR BIOLOGY, 2011, 31 (12) : 2470 - 2483
  • [7] Physiological S-phase checkpoint
    Su, H
    Hang, HY
    PROGRESS IN BIOCHEMISTRY AND BIOPHYSICS, 2006, 33 (02) : 122 - 126
  • [8] Limiting amounts of budding yeast Rad53 S-phase checkpoint activity results in increased resistance to DNA alkylation damage
    Cordon-Preciado, Violeta
    Ufano, Sandra
    Bueno, Avelino
    NUCLEIC ACIDS RESEARCH, 2006, 34 (20) : 5852 - 5862
  • [9] SCFDia2 regulates DNA replication forks during S-phase in budding yeast
    Mimura, Satoru
    Komata, Makiko
    Kishi, Tsutomu
    Shirahige, Katsuhiko
    Kamura, Takumi
    EMBO JOURNAL, 2009, 28 (23) : 3693 - 3705
  • [10] Snf1/AMPK promotes S-phase entrance by controlling CLB5 transcription in budding yeast
    Pessina, Stefania
    Tsiarentsyeva, Viktoryia
    Busnelli, Sara
    Vanoni, Marco
    Alberghina, Lilia
    Coccetti, Paola
    CELL CYCLE, 2010, 9 (11) : 2189 - 2200