Potential Founder Variants in COL4A4 Identified in Bukharian Jews Linked to Autosomal Dominant and Autosomal Recessive Alport Syndrome

被引:0
作者
Levy, Michal [1 ,2 ]
Bazak, Lily [1 ]
Lev-El, Noa [1 ]
Greenberg, Rotem [1 ]
Kropach, Nesia [2 ,3 ]
Basel-Salmon, Lina [1 ,2 ,4 ]
Maya, Idit [1 ,2 ]
机构
[1] Rabin Med Ctr, Raphael Recanati Genet Inst, IL-49100 Petah Tiqwa, Israel
[2] Tel Aviv Univ, Sch Med, POB 39040, Tel Aviv, Israel
[3] Schneider Childrens Med Ctr Israel, Pediat Genet Unit, IL-4920235 Petah Tiqwa, Israel
[4] Felsenstein Med Res Ctr, IL-4920235 Petah Tiqwa, Israel
关键词
COL4A4; Bukharian Jews; Alport syndrome; thin basement membrane disease; hematuria; proteinuria; gene; Bukharian Jewish population; Molecular diagnosis; GENOTYPE-PHENOTYPE CORRELATIONS; NATURAL-HISTORY; DIGENIC INHERITANCE; 195; FAMILIES; GUIDELINES; GENETICS; MUTATIONS; MEDICINE; COLLAGEN;
D O I
10.3390/genes14101854
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
Background: Alport syndrome is a hereditary disorder caused by pathogenic variants in the COL4A gene, which can be inherited in an autosomal recessive, dominant, or X-linked pattern. In the Bukharian Jewish population, no founder pathogenic variant has been reported in COL4A4.Methods: The cohort included 38 patients from 22 Bukharian Jewish families with suspected Alport syndrome who were referred the nephrogenetics clinic between 2012 and 2022. The study collected demographic, clinical, and genetic data from electronic medical records, which were used to evaluate the molecular basis of the disease using Sanger sequencing, and next-generation sequencing.Results: Molecular diagnosis was confirmed in 20/38 patients, with each patient having at least one of the three disease-causing COL4A4 variants detected: c.338GA (p.Gly1008Arg), and c.871-6T>C. In addition, two patients were obligate carriers. Overall, there were 17 heterozygotes, 2 compound heterozygotes, and 3 homozygotes. Each variant was detected in more than one unrelated family. All patients had hematuria with/without proteinuria at referral, and the youngest patient with proteinuria (age 5 years) was homozygous for the c.338G>A variant. End-stage renal disease was diagnosed in two patients at the age of 38 years, a compound heterozygote for c.338G>A and c.871-6T>C. Hearing deterioration was detected in three patients, the youngest aged 40 years, all of whom were heterozygous for c.338G>A.Conclusion: This study unveils three novel disease-causing variants, c.3022G>A, c.871-6T>C, and c.338G>A, in the COL4A4 gene that are recurrent among Jews of Bukharian ancestry, and cause Alport syndrome in both dominant and recessive autosomal inheritance patterns.
引用
收藏
页数:11
相关论文
共 38 条
  • [1] Variant Classification Concordance using the ACMG-AMP Variant Interpretation Guidelines across Nine Genomic Implementation Research Studies
    Amendola, Laura M.
    Muenzen, Kathleen
    Biesecker, Leslie G.
    Bowling, Kevin M.
    Cooper, Greg M.
    Dorschner, Michael O.
    Driscoll, Catherine
    Foreman, Ann Katherine M.
    Golden-Grant, Katie
    Greally, John M.
    Hindorff, Lucia
    Kanavy, Dona
    Jobanputra, Vaidehi
    Johnston, Jennifer J.
    Kenny, Eimear E.
    McNulty, Shannon
    Murali, Priyanka
    Ou, Jeffrey
    Powell, Bradford C.
    Rehm, Heidi L.
    Rolf, Bradley
    Roman, Tamara S.
    Van Ziffle, Jessica
    Guha, Saurav
    Abhyankar, Avinash
    Crosslin, David
    Venner, Eric
    Yuan, Bo
    Zouk, Hana
    Jarvik, Gail P.
    [J]. AMERICAN JOURNAL OF HUMAN GENETICS, 2020, 107 (05) : 932 - 941
  • [2] Common ancestry of three Ashkenazi-American families with Alport syndrome and COL4A5 R1677Q
    Barker, DF
    Denison, JC
    Atkin, CL
    Gregory, MC
    [J]. HUMAN GENETICS, 1997, 99 (05) : 681 - 684
  • [3] Basement Membrane Defects in Genetic Kidney Diseases
    Chew, Christine
    Lennon, Rachel
    [J]. FRONTIERS IN PEDIATRICS, 2018, 6
  • [4] Urine-derived podocytes-lineage cells: A promising tool for precision medicine in Alport Syndrome
    Daga, Sergio
    Baldassarri, Margherita
    Lo Rizzo, Caterina
    Fallerini, Chiara
    Imperatore, Valentina
    Longo, Ilaria
    Frullanti, Elisa
    Landucci, Elisa
    Massella, Laura
    Pecoraro, Carmine
    Garosi, Guido
    Ariani, Francesca
    Mencarelli, Maria Antonietta
    Mari, Francesca
    Renieri, Alessandra
    [J]. HUMAN MUTATION, 2018, 39 (02) : 302 - 314
  • [5] Molecular genetics of familial hematuric diseases
    Deltas, Constantinos
    Pierides, Alkis
    Voskarides, Konstantinos
    [J]. NEPHROLOGY DIALYSIS TRANSPLANTATION, 2013, 28 (12) : 2946 - 2960
  • [6] Alport syndrome: impact of digenic inheritance in patients management
    Fallerini, C.
    Baldassarri, M.
    Trevisson, E.
    Morbidoni, V.
    La Manna, A.
    Lazzarin, R.
    Pasini, A.
    Barbano, G.
    Pinciaroli, A. R.
    Garosi, G.
    Frullanti, E.
    Pinto, A. M.
    Mencarelli, M. A.
    Mari, F.
    Renieri, A.
    Ariani, F.
    [J]. CLINICAL GENETICS, 2017, 92 (01) : 34 - 44
  • [7] Clinical and Genetic Features of Autosomal Dominant Alport Syndrome: A Cohort Study
    Furlano, Monica
    Martinez, Victor
    Pybus, Marc
    Arce, Yolanda
    Crespi, Jaume
    Venegas, Maria del Prado
    Bullich, Gemma
    Domingo, Andrea
    Ayasreh, Nadia
    Benito, Silvia
    Lorente, Laura
    Ruiz, Patricia
    Gonzalez, Vanesa Lopez
    Arlandis, Rosa
    Cabello, Elisa
    Torres, Ferran
    Guirado, Lluis
    Ars, Elisabet
    Torra, Roser
    [J]. AMERICAN JOURNAL OF KIDNEY DISEASES, 2021, 78 (04) : 560 - U82
  • [8] Annotating pathogenic non-coding variants in genic regions
    Gelfman, Sahar
    Wang, Quanli
    McSweeney, K. Melodi
    Ren, Zhong
    La Carpia, Francesca
    Halvorsen, Matt
    Schoch, Kelly
    Ratzon, Fanni
    Heinzen, Erin L.
    Boland, Michael J.
    Petrovski, Slave
    Goldstein, David B.
    [J]. NATURE COMMUNICATIONS, 2017, 8
  • [9] Genotype-phenotype correlations for COL4A3-COL4A5 variants resulting in Gly substitutions in Alport syndrome
    Gibson, Joel T.
    Huang, Mary
    Dabrera, Marina Shenelli Croos
    Shukla, Krushnam
    Rothe, Hansjorg
    Hilbert, Pascale
    Deltas, Constantinos
    Storey, Helen
    Lipska-Zietkiewicz, Beata S.
    Chan, Melanie M. Y.
    Sadeghi-Alavijeh, Omid
    Gale, Daniel P.
    Cerkauskaite, Agne
    Savige, Judy
    [J]. SCIENTIFIC REPORTS, 2022, 12 (01)
  • [10] Screening for autosomal recessive and X-linked conditions during pregnancy and preconception: a practice resource of the American College of Medical Genetics and Genomics (ACMG)
    Gregg, Anthony R.
    Aarabi, Mahmoud
    Klugman, Susan
    Leach, Natalia T.
    Bashford, Michael T.
    Goldwaser, Tamar
    Chen, Emily
    Sparks, Teresa N.
    Reddi, Honey, V
    Rajkovic, Aleksandar
    Dungan, Jeffrey S.
    [J]. GENETICS IN MEDICINE, 2021, 23 (10) : 1793 - 1806