Molecular Biomarker Identification Using a Network-Based Bioinformatics Approach That Links COVID-19 With Smoking

被引:0
|
作者
Rahman, Md Anisur [1 ]
Al Amin, Md [2 ]
Yeasmin, Most Nilufa [3 ]
Islam, Md Zahidul [3 ,4 ]
机构
[1] Islamic Univ, Dept Pharm, Kushtia, Bangladesh
[2] Prime Univ, Dept Comp Sci & Engn, Dhaka, Bangladesh
[3] Islamic Univ, Dept Informat & Commun Technol, Kushtia, Bangladesh
[4] Islamic Univ, Dept Informat & Commun Technol, Kushtia 7003, Bangladesh
来源
BIOINFORMATICS AND BIOLOGY INSIGHTS | 2023年 / 17卷
关键词
Smoking; COVID-19; bio-informatics; GSEA; gene ontology; BLOOD-COAGULATION; CIGARETTE-SMOKING; LUNG-CANCER; DATABASE; IMMUNITY; SERUM; MILD; RISK;
D O I
10.1177/11779322231186481
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
The COVID-19 coronavirus, which primarily affects the lungs, is the source of the disease known as SARS-CoV-2. According to "Smoking and COVID-19: a scoping review," about 32% of smokers had a severe case of COVID-19 pneumonia at their admission time and 15% of non-smokers had this case of COVID-19 pneumonia. We were able to determine which genes were expressed differently in each group by comparing the expression of gene transcriptomic datasets of COVID-19 patients, smokers, and healthy controls. In all, 37 dysregulated genes are common in COVID-19 patients and smokers, according to our analysis. We have applied all important methods namely protein-protein interaction, hub-protein interaction, drug-protein interaction, tf-gene interaction, and gene-MiRNA interaction of bioinformatics to analyze to understand deeply the connection between both smoking and COVID-19 severity. We have also analyzed Pathways and Gene Ontology where 5 significant signaling pathways were validated with previous literature. Also, we verified 7 hub-proteins, and finally, we validated a total of 7 drugs with the previous study.
引用
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页数:15
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