Current state and completeness of reporting clinical prediction models using machine learning in systemic lupus erythematosus: A systematic review

被引:6
作者
Munguia-Realpozo, Pamela [1 ,2 ]
Etchegaray-Morales, Ivet [2 ]
Mendoza-Pinto, Claudia [1 ,2 ]
Mendez-Martinez, Socorro [3 ]
Osorio-Pena, Angel David [2 ]
Ayon-Aguilar, Jorge [3 ]
Garcia-Carrasco, Mario [2 ]
机构
[1] Specialties Hosp UMAE, Mexican Inst Social Secur, Syst Autoimmune Dis Res Unit, CIBIOR, Puebla, Mexico
[2] Meritorious Autonomous Univ Puebla, Med Sch, Dept Rheumatol, Puebla, Mexico
[3] Mexican Social Secur Inst, Coordinat Hlth Res, Puebla, Mexico
关键词
Machine learning; Prediction; Big data; Rheumatic autoimmune diseases; Systematic review; CLASSIFICATION; DIAGNOSIS; OUTCOMES; RISK; ATHEROSCLEROSIS; SIGNATURES; PROGNOSIS; NEPHRITIS; CRITERIA;
D O I
10.1016/j.autrev.2023.103294
中图分类号
R392 [医学免疫学]; Q939.91 [免疫学];
学科分类号
100102 ;
摘要
Objective: We carried out a systematic review (SR) of adherence in diagnostic and prognostic applications of ML in SLE using the Transparent Reporting of a multivariable prediction model for Individual Prognosis Or Diagnosis (TRIPOD) Statement.Methods: A SR employing five databases was conducted from its inception until December 2021. We identified articles that evaluated the utilization of ML for prognostic and/or diagnostic purposes. This SR was reported based on the PRISMA guidelines. The TRIPOD statement assessed adherence to reporting standards. Assessment for risk of bias was done using PROBAST tool.Results: We included 45 studies: 29 (64.4%) diagnostic and 16 (35.5%) prognostic prediction- model studies. Overall, articles adhered by between 17% and 67% (median 43%, IQR 37-49%) to TRIPOD items. Only few articles reported the model's predictive performance (2.3%, 95% CI 0.06-12.0), testing of interaction terms (2.3%, 95% CI 0.06-12.0), flow of participants (50%, 95% CI; 34.6-65.4), blinding of predictors (2.3%, 95% CI 0.06-12.0), handling of missing data (36.4%, 95% CI 22.4-52.2), and appropriate title (20.5%, 95% CI 9.8-35.3). Some items were almost completely reported: the source of data (88.6%, 95% CI 75.4-96.2), eligibility criteria (86.4%, 95% CI 76.2-96.5), and interpretation of findings (88.6%, 95% CI 75.4-96.2). In addition, most of model studies had high risk of bias.Conclusions: The reporting adherence of ML-based model developed for SLE, is currently inadequate. Several items deemed crucial for transparent reporting were not fully reported in studies on ML-based prediction models. Review registration. PROSPERO ID# CRD42021284881. (Amended to limit the scope).
引用
收藏
页数:11
相关论文
共 69 条
  • [1] Lupus or not? SLE Risk Probability Index (SLERPI): a simple, clinician-friendly machine learning-based model to assist the diagnosis of systemic lupus erythematosus
    Adamichou, Christina
    Genitsaridi, Irini
    Nikolopoulos, Dionysis
    Nikoloudaki, Myrto
    Repa, Argyro
    Bortoluzzi, Alessandra
    Fanouriakis, Antonis
    Sidiropoulos, Prodromos
    Boumpas, Dimitrios T.
    Bertsias, George K.
    [J]. ANNALS OF THE RHEUMATIC DISEASES, 2021, 80 (06) : 758 - 766
  • [2] AHA DW, 1991, MACH LEARN, V6, P37, DOI 10.1007/BF00153759
  • [3] Novel risk genes for systemic lupus erythematosus predicted by random forest classification
    Almlof, Jonas Carlsson
    Alexsson, Andrei
    Imgenberg-Kreuz, Juliana
    Sylwan, Lina
    Backlin, Christofer
    Leonard, Dag
    Nordmark, Gunnel
    Tandre, Karolina
    Eloranta, Maija-Leena
    Padyukov, Leonid
    Bengtsson, Christine
    Jonsen, Andreas
    Dahlqvist, Solbritt Rantapaa
    Sjowall, Christopher
    Bengtsson, Anders A.
    Gunnarsson, Iva
    Svenungsson, Elisabet
    Ronnblom, Lars
    Sandling, Johanna K.
    Syvanen, Ann-Christine
    [J]. SCIENTIFIC REPORTS, 2017, 7
  • [4] Validation of a machine learning approach to estimate Systemic Lupus Erythematosus Disease Activity Index score categories and application in a real-world dataset
    Alves, Pedro
    Bandaria, Jigar
    Leavy, Michelle B.
    Gliklich, Benjamin
    Boussios, Costas
    Su, Zhaohui
    Curhan, Gary
    [J]. RMD OPEN, 2021, 7 (02):
  • [5] Transcriptomic analysis of immune cells in a multi-ethnic cohort of systemic lupus erythematosus patients identifies ethnicity- and disease-specific expression signatures
    Andreoletti, Gaia
    Lanata, Cristina M.
    Trupin, Laura
    Paranjpe, Ishan
    Jain, Tia S.
    Nititham, Joanne
    Taylor, Kimberly E.
    Combes, Alexis J.
    Maliskova, Lenka
    Ye, Chun Jimmie
    Katz, Patricia
    Dall'Era, Maria
    Yazdany, Jinoos
    Criswell, Lindsey A.
    Sirota, Marina
    [J]. COMMUNICATIONS BIOLOGY, 2021, 4 (01)
  • [6] Aringer M, 2019, ARTHRITIS RHEUMATOL, V71, P1400, DOI [10.1136/annrheumdis-2018-214819, 10.1002/art.40930]
  • [7] Events per variable (EPV) and the relative performance of different strategies for estimating the out-of-sample validity of logistic regression models
    Austin, Peter C.
    Steyerberg, Ewout W.
    [J]. STATISTICAL METHODS IN MEDICAL RESEARCH, 2017, 26 (02) : 796 - 808
  • [8] Prediction models of treatment response in lupus nephritis
    Ayoub, Isabelle
    Wolf, Bethany J.
    Geng, Linyu
    Song, Huijuan
    Khatiwada, Aastha
    Tsao, Betty P.
    Oates, Jim C.
    Rovin, Brad H.
    [J]. KIDNEY INTERNATIONAL, 2022, 101 (02) : 379 - 389
  • [9] Developing and Validating Methods to Assemble Systemic Lupus Erythematosus Births in the Electronic Health Record
    Barnado, April
    Eudy, Amanda M.
    Blaske, Ashley
    Wheless, Lee
    Kirchoff, Katie
    Oates, Jim C.
    Clowse, Megan E. B.
    [J]. ARTHRITIS CARE & RESEARCH, 2022, 74 (05) : 849 - 857
  • [10] Digital health, big data and smart technologies for the care of patients with systemic autoimmune diseases: Where do we stand?
    Bergier, Hugo
    Duron, Loic
    Sordet, Christelle
    Kawka, Lou
    Schlencker, Aurelien
    Chasset, Francois
    Arnaud, Laurent
    [J]. AUTOIMMUNITY REVIEWS, 2021, 20 (08)