Draft genome sequences of halotolerant Halomonas spp. SpR1 and SpR8, potential plant growth-promoting bacteria associated with Salicornia rhizosphere in a hydrothermal lagoon ecosystem of the Altiplano, Northern Chile

被引：2

作者：

Alvarez-Hubert, Inaudis ^{[1
,2
]}

Duran, Roberto E. ^{[1
,2
]}

Vega-Celedon, Paulina ^{[1
,2
]}

Vasconez, Ingrid-Nicole ^{[1
,2
]}

Macaya, Constanza C. ^{[1
,2
]}

Seeger, Michael ^{[1
,2
]}

机构：

[1] Univ Tecn Federico Santa Maria, Dept Quim, Lab Microbiol Mol & Biotecnol Ambiental, Valparaiso, Chile

[2] Univ Tecn Federico Santa Maria, Ctr Biotecnol Daniel Alkalay Lowitt, Valparaiso, Chile

来源：

MICROBIOLOGY RESOURCE ANNOUNCEMENTS | 2024年 / 13卷 / 01期

关键词：

Halomonas; Altiplano; Chile; genome analysis; Salicornia; hydrothermal lagoon; PHYLOGENY;

D O I：

10.1128/MRA.00822-23

中图分类号：

Q93 [微生物学];

学科分类号：

071005 ; 100705 ;

摘要：

Halotolerant Halomonas spp. SpR1 and SpR8 are potential plant growth-promoting bacteria (PGPB) isolated from Salicornia rhizosphere in a Chilean Altiplano hydrothermal lagoon. We report draft genomes of Halomonas sp. SpR1 (5.17Mb) and Halomonas sp. SpR8 (4.47 Mb). Both represent potentially novel independent species closely related to Halomonas boliviensis DSM 15516(T).

引用

页数：4

共 17 条

[1] antiSMASH 6.0: improving cluster detection and comparison capabilities [J].

Blin, Kai ;

Shaw, Simon ;

Kloosterman, Alexander M. ;

Charlop-Powers, Zach ;

van Wezel, Gilles P. ;

Medema, Marnix H. ;

Weber, Tilmann .

NUCLEIC ACIDS RESEARCH, 2021, 49 (W1) :W29-W35

[2] Trimmomatic: a flexible trimmer for Illumina sequence data [J].

Bolger, Anthony M. ;

Lohse, Marc ;

Usadel, Bjoern .

BIOINFORMATICS, 2014, 30 (15) :2114-2120

[3] ESTIMATING PHYLOGENETIC TREES FROM DISTANCE MATRICES [J].

FARRIS, JS .

AMERICAN NATURALIST, 1972, 106 (951) :645-&

[4] FastME 2.0: A Comprehensive, Accurate, and Fast Distance-Based Phylogeny Inference Program [J].

Lefort, Vincent ;

Desper, Richard ;

Gascuel, Olivier .

MOLECULAR BIOLOGY AND EVOLUTION, 2015, 32 (10) :2798-2800

[5] Interactive Tree Of Life (iTOL) v5: an online tool for phylogenetic tree display and annotation [J].

Letunic, Ivica ;

Bork, Peer .

NUCLEIC ACIDS RESEARCH, 2021, 49 (W1) :W293-W296

[6] RefSeq: expanding the Prokaryotic Genome Annotation Pipeline reach with protein family model curation [J].

Li, Wenjun ;

O'Neill, Kathleen R. ;

Haft, Daniel H. ;

DiCuccio, Michael ;

Chetvernin, Vyacheslav ;

Badretdin, Azat ;

Coulouris, George ;

Chitsaz, Farideh ;

Derbyshire, Myra K. ;

Durkin, A. Scott ;

Gonzales, Noreen R. ;

Gwadz, Marc ;

Lanczycki, Christopher J. ;

Song, James S. ;

Thanki, Narmada ;

Wang, Jiyao ;

Yamashita, Roxanne A. ;

Yang, Mingzhang ;

Zheng, Chanjuan ;

Marchler-Bauer, Aron ;

Thibaud-Nissen, Francoise .

NUCLEIC ACIDS RESEARCH, 2021, 49 (D1) :D1020-D1028

[7] Potashchelins, a Suite of Lipid Siderophores Bearing Both L-threo and L-erythro Beta-Hydroxyaspartic Acids, Acquired From the Potash-Salt-Ore-Derived Extremophile Halomonas sp. MG34 [J].

Li, Yihong ;

Liu, Li ;

Zhang, Gengxin ;

He, Ning ;

Guo, Wenqiang ;

Hong, Bin ;

Xie, Yunying .

FRONTIERS IN CHEMISTRY, 2020, 8

[8] TYGS and LPSN: a database tandem for fast and reliable genome-based classification and nomenclature of prokaryotes [J].

Meier-Kolthoff, Jan P. ;

Carbasse, Joaquim Sarda ;

Peinado-Olarte, Rosa L. ;

Goeker, Markus .

NUCLEIC ACIDS RESEARCH, 2022, 50 (D1) :D801-D807

[9] Halomonas Rhizobacteria of Avicennia marina of Indian Sundarbans Promote Rice Growth Under Saline and Heavy Metal Stresses Through Exopolysaccharide Production [J].

Mukherjee, Pritam ;

Mitra, Abhijit ;

Roy, Madhumita .

FRONTIERS IN MICROBIOLOGY, 2019, 10

[10] Living at the Frontiers of Life: Extremophiles in Chile and Their Potential for Bioremediation [J].

Orellana, Roberto ;

Macaya, Constanza ;

Bravo, Guillermo ;

Dorochesi, Flavia ;

Cumsille, Andres ;

Valencia, Ricardo ;

Rojas, Claudia ;

Seeger, Michael .

FRONTIERS IN MICROBIOLOGY, 2018, 9

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