Identification and exploration of aging-related subtypes and distinctive role of SERPINE1 in heart failure based on single-cell and bulk RNA sequencing data

被引:3
|
作者
Li, Shengnan [1 ]
Kong, Fanliang [2 ]
Xu, Xuan [1 ]
Song, Sifan [1 ]
Wu, Yandan [1 ,3 ]
Tong, Jiayi [1 ,3 ]
机构
[1] Southeast Univ, Dept Cardiol, Zhongda Hosp, Nanjing, Jiangsu, Peoples R China
[2] Southeast Univ, Inst Life Sci, Key Lab Dev Genes & Human Dis, Jiangsu Prov High Tech Key Lab Biomed Res,Minist E, Nanjing, Peoples R China
[3] Southeast Univ, Dept Cardiol, Zhongda Hosp, Nanjing 210009, Jiangsu, Peoples R China
关键词
aging-related genes; diagnostic biomarker genes; fibroblasts; heart failure; molecular phenotype; GENE-EXPRESSION SIGNATURES; SENESCENT CELLS; REGENERATION;
D O I
10.1002/jgm.3631
中图分类号
Q81 [生物工程学(生物技术)]; Q93 [微生物学];
学科分类号
071005 ; 0836 ; 090102 ; 100705 ;
摘要
Aging is a major risk factor for heart failure (HF) and is the leading cause of death worldwide. Currently, the nature of the relationship between aging and HF is not entirely clear. Herein, this study aimed to explore new diagnostic biomarkers, molecular typing and therapeutic strategies for HF by investigating the biological significance of aging-related genes in HF. A total of 157 differentially expressed genes (DEGs) were screened totally between HF and normal samples, and functional enrichment analysis of DEGs revealed the strong association of HF progression with aging, immune processes and metabolism. Six HF-specific aging-related genes were further identified, and a diagnostic model was developed and validated for good diagnostic efficacy. In addition, we collected blood samples from 10 normal controls and 10 HF patients for RT-qPCR analysis to verify the bioinformation. We also identified two aging-associated subtypes with distinctly different immune infiltration and metabolic microenvironment. Further single-cell sequencing analysis conducted in the study identified SERPINE1 as a key gene in HF. The distinctive role of SERPINE1 fibroblasts was revealed, including three main findings: (I) fibroblasts had a higher proportion and expression of SERPINE1 levels in HF; (II) the ligand-receptor pair MDK-LRP1 made the most contributions in high interactions with other cell types in SERPINE1 fibroblasts; and (III) SERPINE1 fibroblasts were associated with the interaction of extracellular matrix and receptor and may be regulated by the transcription factor EGR1. In conclusion, this study highlights the importance of aging-related genes in diagnosing HF and regulating immune infiltration. We also identified different HF subtypes and a potentially crucial gene, which may provide a better understanding of the molecular-level mechanisms of aging-related HF and aid in developing effective therapeutic strategies. This study provided a comprehensive investigation on the biological significance of aging-related genes in HF and explored new diagnostic biomarkers, molecular typing and therapeutic strategies for HF. SERPINE1 was identified to be a key gene in HF in further single-cell sequencing analysis and the distinctive role of SERPINE1 fibroblasts was revealed.image
引用
收藏
页数:17
相关论文
共 13 条
  • [1] Integrative Analysis of Bulk and Single-Cell RNA Sequencing Data Reveals Cell Types Involved in Heart Failure
    Shi, Xin
    Zhang, Li
    Li, Yi
    Xue, Jieyuan
    Liang, Feng
    Ni, Han-wen
    Wang, Xia
    Cai, Zhaohua
    Shen, Ling-hong
    Huang, Tao
    He, Ben
    FRONTIERS IN BIOENGINEERING AND BIOTECHNOLOGY, 2022, 9
  • [2] Integration single-cell and bulk RNA-sequencing data to reveal senescence gene expression profiles in heart failure
    Kuai, Zheng
    Hu, Yu
    HELIYON, 2023, 9 (06)
  • [3] Identification of the distinctive role of DPT in dilated cardiomyopathy: a study based on bulk and single-cell transcriptomic analysis
    Lu, Yang
    Wu, Qiongfeng
    Liao, Jie
    Zhang, Shaoshao
    Lu, Kai
    Yang, Shuaitao
    Wu, Yuwei
    Dong, Qian
    Yuan, Jing
    Zhao, Ning
    Du, Yimei
    ANNALS OF TRANSLATIONAL MEDICINE, 2021, 9 (18)
  • [4] Exploration of neuron heterogeneity in human heart failure with dilated cardiomyopathy through single-cell RNA sequencing analysis
    Yu-Hui Cui
    Chun-Rong Wu
    Dan Xu
    Jian-Guo Tang
    BMC Cardiovascular Disorders, 24
  • [5] Exploration of neuron heterogeneity in human heart failure with dilated cardiomyopathy through single-cell RNA sequencing analysis
    Cui, Yu-Hui
    Wu, Chun-Rong
    Xu, Dan
    Tang, Jian-Guo
    BMC CARDIOVASCULAR DISORDERS, 2024, 24 (01)
  • [6] Identification of TGF-13-related genes in cardiac hypertrophy and heart failure based on single cell RNA sequencing
    Huang, Kai
    Wu, Hao
    Xu, Xiangyang
    Wu, Lujia
    Li, Qin
    Han, Lin
    AGING-US, 2023, 15 (14): : 7187 - 7218
  • [7] Integration of single-cell and bulk RNA sequencing data using machine learning identifies oxidative stress-related genes LUM and PCOLCE2 as potential biomarkers for heart failure
    Li, Chaofang
    Hao, Ruijinlin
    Li, Chuanfu
    Liu, Li
    Ding, Zhengnian
    INTERNATIONAL JOURNAL OF BIOLOGICAL MACROMOLECULES, 2025, 300
  • [8] Macrophage migration inhibitory factor mediates skin aging via CD74: Insights from single-cell and bulk RNA sequencing data
    Wu, Songjiang
    Ouyang, Yujie
    Hu, Yibo
    Jiang, Ling
    Fu, Chuhan
    Lei, Li
    Zhang, Yushan
    Guo, Haoran
    Huang, Jinhua
    Chen, Jing
    Zeng, Qinghai
    CLINICAL IMMUNOLOGY, 2024, 263
  • [9] Exploring key genes associated with neutrophil function and neutrophil extracellular traps in heart failure: a comprehensive analysis of single-cell and bulk sequencing data
    Li, Xudong
    Xu, Changhao
    Li, Qiaoqiao
    Shen, Qingxiang
    Zeng, Long
    FRONTIERS IN CELL AND DEVELOPMENTAL BIOLOGY, 2023, 11
  • [10] Construction of a hypoxia-immune-related prognostic panel based on integrated single-cell and bulk RNA sequencing analyses in gastric cancer
    Deng, Cuncan
    Deng, Guofei
    Chu, Hongwu
    Chen, Songyao
    Chen, Xiancong
    Li, Xing
    He, Yulong
    Sun, Chunhui
    Zhang, Changhua
    FRONTIERS IN IMMUNOLOGY, 2023, 14