On the number of genealogical ancestors tracing to the source groups of an admixed population

被引:5
作者
Mooney, Jazlyn A. [1 ,2 ]
Agranat-Tamir, Lily [1 ]
Pritchard, Jonathan K. [1 ,3 ]
Rosenberg, Noah A. [1 ,4 ]
机构
[1] Stanford Univ, Dept Biol, Stanford, CA 94305 USA
[2] Univ Southern Calif, Dept Quantitat & Computat Biol, Los Angeles, CA 90089 USA
[3] Stanford Univ, Dept Genet, Stanford, CA 94305 USA
[4] Stanford Univ, 27 Campus Dr, Stanford, CA 94305 USA
基金
美国国家科学基金会;
关键词
admixture; ancestry; genealogy; population genetics; MECHANISTIC MODEL; COALESCENCE TIMES; GENETIC ANCESTRY; ADMIXTURE; PEDIGREE; SIGNATURES; VARIANCE;
D O I
10.1093/genetics/iyad079
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
Members of genetically admixed populations possess ancestry from multiple source groups, and studies of human genetic admixture frequently estimate ancestry components corresponding to fractions of individual genomes that trace to specific ancestral populations. However, the same numerical ancestry fraction can represent a wide array of admixture scenarios within an individual's genealogy. Using a mechanistic model of admixture, we consider admixture genealogically: how many ancestors from the source populations does the admixture represent? We consider African-Americans, for whom continent-level estimates produce a 75-85% value for African ancestry on average and 15-25% for European ancestry. Genetic studies together with key features of African-American demographic history suggest ranges for parameters of a simple three-epoch model. Considering parameter sets compatible with estimates of current ancestry levels, we infer that if all genealogical lines of a random African-American born during 1960-1965 are traced back until they reach members of source populations, the mean over parameter sets of the expected number of genealogical lines terminating with African individuals is 314 (interquartile range 240-376), and the mean of the expected number terminating in Europeans is 51 (interquartile range 32-69). Across discrete generations, the peak number of African genealogical ancestors occurs in birth cohorts from the early 1700s, and the probability exceeds 50% that at least one European ancestor was born more recently than 1835. Our genealogical perspective can contribute to further understanding the admixture processes that underlie admixed populations. For African-Americans, the results provide insight both on how many of the ancestors of a typical African-American might have been forcibly displaced in the Transatlantic Slave Trade and on how many separate European admixture events might exist in a typical African-American genealogy.
引用
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页数:15
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