Functionalizing DNA origami to investigate and interact with biological systems

被引:75
作者
Knappe, Grant A. [1 ,2 ]
Wamhoff, Eike-Christian [1 ]
Bathe, Mark [1 ]
机构
[1] MIT, Dept Biol Engn, Cambridge, MA 02142 USA
[2] MIT, Dept Chem Engn, Cambridge, MA 02142 USA
基金
美国国家科学基金会;
关键词
CLICK CHEMISTRY; CELLULAR UPTAKE; FOLDING DNA; PROTEIN DECORATION; NANOSTRUCTURES; DELIVERY; BINDING; NANOPARTICLES; VISUALIZATION; STREPTAVIDIN;
D O I
10.1038/s41578-022-00517-x
中图分类号
TB3 [工程材料学];
学科分类号
0805 ; 080502 ;
摘要
DNA origami has emerged as a powerful method to generate DNA nanostructures with dynamic properties and nanoscale control. These nanostructures enable complex biophysical studies and the fabrication of next-generation therapeutic devices. For these applications, DNA origami typically needs to be functionalized with bioactive ligands and biomacromolecular cargos. Here, we review methods developed to functionalize, purify and characterize DNA origami nanostructures. We identify remaining challenges such as limitations in functionalization efficiency and characterization. We then discuss where researchers can contribute to further advance the fabrication of functionalized DNA origami.
引用
收藏
页码:123 / 138
页数:16
相关论文
共 292 条
[1]   Construction of an optically controllable CRISPR-Cas9 system using a DNA origami nanostructure [J].
Abe, Katsuhiko ;
Sugiyama, Hiroshi ;
Endo, Masayuki .
CHEMICAL COMMUNICATIONS, 2021, 57 (45) :5594-5596
[2]   Critical review of nucleic acid nanotechnology to identify gaps and inform a strategy for accelerated clinical translation [J].
Afonin, Kirill A. ;
Dobrovolskaia, Marina A. ;
Ke, Weina ;
Grodzinski, Piotr ;
Bathe, Mark .
ADVANCED DRUG DELIVERY REVIEWS, 2022, 181
[3]   Opportunities, Barriers, and a Strategy for Overcoming Translational Challenges to Therapeutic Nucleic Acid Nanotechnology [J].
Afonin, Kirill A. ;
Dobrovolskaia, Marina A. ;
Church, George ;
Bathe, Mark .
ACS NANO, 2020, 14 (08) :9221-9227
[4]   Block Copolymer Micellization as a Protection Strategy for DNA Origami [J].
Agarwal, Nayan P. ;
Matthies, Michael ;
Guer, Fatih N. ;
Osada, Kensuke ;
Schmidt, Thorsten L. .
ANGEWANDTE CHEMIE-INTERNATIONAL EDITION, 2017, 56 (20) :5460-5464
[5]   Gene-therapy Inspired Polycation Coating for Protection of DNA Origami Nanostructures [J].
Ahmadi, Yasaman ;
Barisic, Ivan .
JOVE-JOURNAL OF VISUALIZED EXPERIMENTS, 2019, (143)
[6]   (Poly)cation-induced protection of conventional and wireframe DNA origami nanostructures [J].
Ahmadi, Yasaman ;
De Llano, Elisa ;
Barisic, Ivan .
NANOSCALE, 2018, 10 (16) :7494-7504
[7]   Engineering Cell Surface Function with DNA Origami [J].
Akbari, Ehsan ;
Mollica, Molly Y. ;
Lucas, Christopher R. ;
Bushman, Sarah M. ;
Patton, Randy A. ;
Shahhosseini, Melika ;
Song, Jonathan W. ;
Castro, Carlos E. .
ADVANCED MATERIALS, 2017, 29 (46)
[8]   A combinatorial library of lipid-like materials for delivery of RNAi therapeutics [J].
Akinc, Akin ;
Zumbuehl, Andreas ;
Goldberg, Michael ;
Leshchiner, Elizaveta S. ;
Busini, Valentina ;
Hossain, Naushad ;
Bacallado, Sergio A. ;
Nguyen, David N. ;
Fuller, Jason ;
Alvarez, Rene ;
Borodovsky, Anna ;
Borland, Todd ;
Constien, Rainer ;
de Fougerolles, Antonin ;
Dorkin, J. Robert ;
Jayaprakash, K. Narayanannair ;
Jayaraman, Muthusamy ;
John, Matthias ;
Koteliansky, Victor ;
Manoharan, Muthiah ;
Nechev, Lubomir ;
Qin, June ;
Racie, Timothy ;
Raitcheva, Denitza ;
Rajeev, Kallanthottathil G. ;
Sah, Dinah W. Y. ;
Soutschek, Juergen ;
Toudjarska, Ivanka ;
Vornlocher, Hans-Peter ;
Zimmermann, Tracy S. ;
Langer, Robert ;
Anderson, Daniel G. .
NATURE BIOTECHNOLOGY, 2008, 26 (05) :561-569
[9]   Molecular goniometers for single-particle cryo-electron microscopy of DNA-binding proteins [J].
Aksel, Tural ;
Yu, Zanlin ;
Cheng, Yifan ;
Douglas, Shawn M. .
NATURE BIOTECHNOLOGY, 2021, 39 (03) :378-386
[10]  
Amir Y, 2014, NAT NANOTECHNOL, V9, P353, DOI [10.1038/NNANO.2014.58, 10.1038/nnano.2014.58]