Prognostic and immune correlation analysis of mitochondrial autophagy and aging-related genes in lung adenocarcinoma

被引:6
作者
Meng, Xiangzhi [1 ]
Song, Weijian [1 ]
Zhou, Boxuan [1 ]
Liang, Mei [1 ]
Gao, Yushun [1 ]
机构
[1] Chinese Acad Med Sci & Peking Union Med Coll, Dept Thorac Surg, Natl Canc Ctr, Natl Clin Res Ctr Canc,Canc Hosp, Nanli 17, Beijing 100021, Peoples R China
关键词
Lung adenocarcinoma; Mitophagy; Aging; TCGA; GEO; Prognosis; EXPRESSION; CANCER; METASTASIS; SIGNATURES; APOPTOSIS; MELANOMA; DATABASE; VIRUS; PAICS; CELLS;
D O I
10.1007/s00432-023-05390-x
中图分类号
R73 [肿瘤学];
学科分类号
100214 ;
摘要
Purpose Mitophagy and aging (MiAg) are very important pathophysiological mechanisms contributing to tumorigenesis. MiAg-related genes have prognostic value in lung adenocarcinoma (LUAD). However, prognostic, and immune correlation studies of MiAg-related genes in LUAD are lacking.Methods MiAg differentially expressed genes (DEGs) in LUAD were obtained from public sequencing datasets. A prognostic model including MiAg DEGs was constructed according to patients divided into low- and high-risk groups. Gene Ontology, gene set enrichment analysis, gene set variation analysis, CIBERSORT immune infiltration analysis, and clinical characteristic correlation analyses were performed for functional annotation and correlation of MiAgs with prognosis in patients with LUAD.Results Seven MiAg DEGs of LUAD were identified: CAV1, DSG2, DSP, MYH11, NME1, PAICS, PLOD2, and the expression levels of these genes were significantly correlated (P < 0.05). The RiskScore of the MiAg DEG prognostic model demonstrated high predictive ability of overall survival of patients diagnosed with LUAD. Patients with high and low MiAg phenotypic scores exhibited significant differences in the infiltration levels of eight types of immune cells (P < 0.05). The multi-factor DEG regression model showed higher efficacy in predicting 5-year survival than 3- and 1-year survival of patients with LUAD.Conclusions Seven MiAg-related genes were identified to be significantly associated with the prognosis of patients diagnosed with LUAD. Moreover, the identified MiAg DEGs might affect the immunotherapy strategy of patients with LUAD.
引用
收藏
页码:16311 / 16335
页数:25
相关论文
共 65 条
[1]   Nerve Density and Neuronal Biomarkers in Cancer [J].
Ali, Shahrukh R. ;
Jordan, Madeleine ;
Nagarajan, Priyadharsini ;
Amit, Moran .
CANCERS, 2022, 14 (19)
[2]   NCBI GEO: mining tens of millions of expression profiles - database and tools update [J].
Barrett, Tanya ;
Troup, Dennis B. ;
Wilhite, Stephen E. ;
Ledoux, Pierre ;
Rudnev, Dmitry ;
Evangelista, Carlos ;
Kim, Irene F. ;
Soboleva, Alexandra ;
Tomashevsky, Maxim ;
Edgar, Ron .
NUCLEIC ACIDS RESEARCH, 2007, 35 :D760-D765
[3]   Oncogenic pathway signatures in human cancers as a guide to targeted therapies [J].
Bild, AH ;
Yao, G ;
Chang, JT ;
Wang, QL ;
Potti, A ;
Chasse, D ;
Joshi, MB ;
Harpole, D ;
Lancaster, JM ;
Berchuck, A ;
Olson, JA ;
Marks, JR ;
Dressman, HK ;
West, M ;
Nevins, JR .
NATURE, 2006, 439 (7074) :353-357
[4]   The NM23 family in development [J].
Bilitou, Aikaterini ;
Watson, Julie ;
Gartner, Anton ;
Ohnuma, Shin-ichi .
MOLECULAR AND CELLULAR BIOCHEMISTRY, 2009, 329 (1-2) :17-33
[5]   Increased lung metastasis in transgenic NM23-Null/SV40 mice with hepatocellular carcinoma [J].
Boissan, M ;
Wendum, D ;
Arnaud-Dabernat, S ;
Munier, A ;
Debray, M ;
Lascu, I ;
Daniel, JY ;
Lacombe, ML .
JNCI-JOURNAL OF THE NATIONAL CANCER INSTITUTE, 2005, 97 (11) :836-845
[6]   Desmoglein-2 is overexpressed in non-small cell lung cancer tissues and its knockdown suppresses NSCLC growth by regulation of p27 and CDK2 [J].
Cai, Feng ;
Zhu, Qingqing ;
Miao, Yingying ;
Shen, Simei ;
Su, Xin ;
Shi, Yi .
JOURNAL OF CANCER RESEARCH AND CLINICAL ONCOLOGY, 2017, 143 (01) :59-69
[7]   Nonparametric bootstrap inference for the targeted highly adaptive least absolute shrinkage and selection operator (LASSO) estimator [J].
Cai, Weixin ;
van der Laan, Mark .
INTERNATIONAL JOURNAL OF BIOSTATISTICS, 2020, 16 (02)
[8]   A Role for De Novo Purine Metabolic Enzyme PAICS in Bladder Cancer Progression [J].
Chakravarthi, Balabhadrapatruni V. S. K. ;
Pena, Maria Del Carmen Rodriguez ;
Agarwal, Sumit ;
Chandrashekar, Darshan S. ;
Balasubramanya, Sai Akshaya Hodigere ;
Jabboure, Fayez J. ;
Matoso, Andres ;
Bivalacqua, Trinity J. ;
Rezaei, Katayoon ;
Chaux, Alcides ;
Grizzle, William E. ;
Sonpavde, Guru ;
Gordetsky, Jennifer ;
Netto, George J. ;
Varambally, Sooryanarayana .
NEOPLASIA, 2018, 20 (09) :894-904
[9]   Expression and role of PAICS, a de novo purine biosynthetic gene in prostate cancer (vol 77, pg 10, 2017) [J].
Chakravarthi, Balabhadrapatruni V. S. K. ;
Goswami, Moloy T. ;
Pathi, Satya S. ;
Dodson, Matthew ;
Chandrashekar, Darshan S. ;
Agarwal, Sumit ;
Nepal, Saroj ;
Balasubramanya, Sai Akshaya Hodigere ;
Siddiqui, Javed ;
Lonigro, Robert J. ;
Chinnaiyan, Arul M. ;
Kunju, Lakshmi P. ;
Palanisamy, Nallasivam ;
Varambally, Sooryanarayana .
PROSTATE, 2018, 78 (09) :693-694
[10]  
Chen BB, 2018, METHODS MOL BIOL, V1711, P243, DOI 10.1007/978-1-4939-7493-1_12