Rapid detection of human adenovirus subgroup B using recombinase polymerase amplification assay

被引:0
作者
Zhu, Yongzhe [1 ]
Xia, Binghui [1 ]
Xu, Haizhou [2 ]
Liu, Zengxin [3 ]
Wang, Ru [3 ]
Cai, Qingqing [3 ]
Zhao, Ping [1 ]
Qi, Zhongtian [1 ]
机构
[1] Naval Med Univ, Dept Microbiol, 800 Xiangyin Rd, Shanghai 200433, Peoples R China
[2] Naval Med Univ, Changhai Hosp, Dept Emergency, Shanghai 200433, Peoples R China
[3] Genoxor Med Sci & Technol Inc, Shanghai 201112, Peoples R China
关键词
Adenovirus; Human adenovirus subgroup B; HAdV B; Recombinase polymerase amplification assay; RPA; ACUTE RESPIRATORY-DISEASE; MOLECULAR EPIDEMIOLOGY; INFECTION; DIAGNOSIS; OUTBREAKS; ILLNESS; CHINA; PCR;
D O I
10.1007/s11262-023-02044-5
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
Human adenovirus subgroup B (HAdV B) is one of the major pathogens of human respiratory virus infections, which has considerable transmission and morbidity in a variety of populations. Therefore, rapid and specific detection of HAdV B in clinical samples is essential for diagnosis. This study aimed to develop a product for rapid nucleic acid detection of HAdV B using recombinase polymerase amplification assay (RPA) and validate the performance of this method by using clinical samples. Results showed that this method achieved a lower limit of detection (LOD) of 10 copies/mu L and had no cross-reactivity with other adenovirus subgroups or respiratory pathogens. In addition to high sensitivity, it can be completed within 30 min at 40 degrees C. There is no need to perform nucleic acid extraction on clinical samples. Taking qPCR as the gold standard, the RPA assay possessed a high concordance (Cohen's kappa, 0.896; 95% CI 0.808-0.984; P < 0.001), with a sensitivity of 87.80% and a specificity of 100.00%. The RPA assay developed in this study provided a simple and highly specific method, making it an important tool for rapid adenovirus nucleic acid detection and facilitating large-scale population screening in resource-limited settings.
引用
收藏
页码:18 / 24
页数:7
相关论文
共 50 条
  • [1] Rapid detection of human adenovirus subgroup B using recombinase polymerase amplification assay
    Yongzhe Zhu
    Binghui Xia
    Haizhou Xu
    Zengxin Liu
    Ru Wang
    Qingqing Cai
    Ping Zhao
    Zhongtian Qi
    Virus Genes, 2024, 60 : 18 - 24
  • [2] A recombinase polymerase amplification assay for rapid detection of rabies virus
    Faye, Martin
    Abd El Wahed, Ahmed
    Faye, Oumar
    Kissenkoetter, Jonas
    Hoffmann, Bernd
    Sall, Amadou Alpha
    Faye, Ousmane
    SCIENTIFIC REPORTS, 2021, 11 (01)
  • [3] Recombinase Polymerase Amplification for Rapid Detection of Human Bacterial Pneumonia Pathogens
    Lapa, S. A.
    Surzhikov, S. A.
    Blagodatskikh, S. A.
    Shershov, V. E.
    Chudinov, A. V.
    MOLECULAR BIOLOGY, 2023, 57 (03) : 544 - 549
  • [4] Rapid and sensitive detection of Anaplasma phagocytophilum using a newly developed recombinase polymerase amplification assay
    Zhao, Shanshan
    Cui, Yanyan
    Jing, Jichun
    Yan, Yaqun
    Peng, Yongshuai
    Shi, Ke
    Wang, Kunlun
    Zhou, Yongchun
    Jian, Fuchun
    Zhang, Longxian
    Wang, Rongjun
    Ning, Changshen
    EXPERIMENTAL PARASITOLOGY, 2019, 201 : 21 - 25
  • [5] Development of a Recombinase Polymerase Amplification Assay for Detection of Epidemic Human Noroviruses
    Moore, Matthew D.
    Jaykus, Lee-Ann
    SCIENTIFIC REPORTS, 2017, 7
  • [6] Recombinase polymerase amplification assay for rapid detection of lumpy skin disease virus
    Shalaby, Mohamed A.
    El-Deeb, Ayman
    El-Tholoth, Mohamed
    Hoffmann, Donata
    Czerny, Claus-Peter
    Hufert, Frank T.
    Weidmann, Manfred
    Abd El Wahed, Ahmed
    BMC VETERINARY RESEARCH, 2016, 12
  • [7] Recombinase polymerase amplification assay for rapid detection of Monkeypox virus
    Davi, Saskia Dede
    Kissenkoetter, Jonas
    Faye, Martin
    Boehlken-Fascher, Susanne
    Stahl-Hennig, Christiane
    Faye, Oumar
    Faye, Ousmane
    Sall, Amadou A.
    Weidmann, Manfred
    Ademowo, Olusegun George
    Hufert, Frank T.
    Czerny, Claus-Peter
    Abd El Wahed, Ahmed
    DIAGNOSTIC MICROBIOLOGY AND INFECTIOUS DISEASE, 2019, 95 (01) : 41 - 45
  • [8] Mobile suitcase laboratory for rapid detection of Leishmania donovani using recombinase polymerase amplification assay
    Mondal, Dinesh
    Ghosh, Prakash
    Khan, Md Anik Ashfaq
    Hossain, Faria
    Boehlken-Fascher, Susanne
    Matlashewski, Greg
    Kroeger, Axel
    Olliaro, Piero
    Abd El Wahed, Ahmed
    PARASITES & VECTORS, 2016, 9
  • [9] Development of a Sensitive and Rapid Recombinase Polymerase Amplification Assay for Detection of Anaplasma phagocytophilum
    Jiang, Le
    Ching, Philip
    Chao, Chien-Chung
    Dumler, J. Stephen
    Ching, Wei-Mei
    JOURNAL OF CLINICAL MICROBIOLOGY, 2020, 58 (05)
  • [10] Recombinase polymerase amplification assay for rapid detection of Rift Valley fever virus
    Euler, Milena
    Wang, Yongjie
    Nentwich, Oliver
    Piepenburg, Olaf
    Hufert, Frank T.
    Weidmann, Manfred
    JOURNAL OF CLINICAL VIROLOGY, 2012, 54 (04) : 308 - 312