Insight into structural biophysics from solution X-ray scattering

被引:5
|
作者
Raviv, Uri [1 ,2 ]
Asor, Roi [1 ]
Shemesh, Asaf [1 ]
Ginsburg, Avi [1 ]
Ben-Nun, Tal [1 ]
Schilt, Yaelle [1 ]
Levartovsky, Yehonatan [1 ]
Ringel, Israel [3 ]
机构
[1] Hebrew Univ Jerusalem, Inst Chem, Edmond J Safra Campus, IL-9190401 Jerusalem, Israel
[2] Hebrew Univ Jerusalem, Ctr Nanosci & Nanotechnol, Edmond J Safra Campus, IL-9190401 Jerusalem, Israel
[3] Hebrew Univ Jerusalem, Inst Drug Res, Sch Pharm, IL-9112102 Jerusalem, Israel
基金
以色列科学基金会;
关键词
Self-assembly; SAXS; WAXS; Time-resolved SAXS; SMALL-ANGLE SCATTERING; DIRECT SHAPE DETERMINATION; D-PLUS SOFTWARE; BIOLOGICAL MACROMOLECULES; CALCIUM-IONS; WEB SERVER; HIERARCHICAL ALGORITHM; RESOLUTION STRUCTURE; MOLECULAR-DYNAMICS; SAXS;
D O I
10.1016/j.jsb.2023.108029
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
The current challenges of structural biophysics include determining the structure of large self-assembled com-plexes, resolving the structure of ensembles of complex structures and their mass fraction, and unraveling the dynamic pathways and mechanisms leading to the formation of complex structures from their subunits. Modern synchrotron solution X-ray scattering data enable simultaneous high-spatial and high-temporal structural data required to address the current challenges of structural biophysics. These data are complementary to crystal-lography, NMR, and cryo-TEM data. However, the analysis of solution scattering data is challenging; hence many different analysis tools, listed in the SAS Portal (http://smallangle.org/), were developed. In this review, we start by briefly summarizing classical X-ray scattering analyses providing insight into fundamental structural and interaction parameters. We then describe recent developments, integrating simulations, theory, and advanced X-ray scattering modeling, providing unique insights into the structure, energetics, and dynamics of self-assembled complexes. The structural information is essential for understanding the underlying physical chemistry principles leading to self-assembled supramolecular architectures and computational structural refinement.
引用
收藏
页数:21
相关论文
共 50 条
  • [41] SATELLITE X-RAY SCATTERING AND STRUCTURAL MODULATION OF THIOUREA
    SHIOZAKI, Y
    FERROELECTRICS, 1971, 2 (04) : 245 - &
  • [42] Structural studies of carbons by neutron and x-ray scattering
    Burian, Andrzej
    Dore, John C.
    Jurkiewicz, Karolina
    REPORTS ON PROGRESS IN PHYSICS, 2019, 82 (01)
  • [43] Structural characterization of nanotube fibers by X-ray scattering
    Launois, P
    Marucci, A
    Vigolo, B
    Bernier, P
    Derré, A
    Poulin, P
    JOURNAL OF NANOSCIENCE AND NANOTECHNOLOGY, 2001, 1 (02) : 125 - 128
  • [44] X-ray Scattering Studies of Protein Structural Dynamics
    Meisburger, Steve P.
    Thomas, William C.
    Watkins, Maxwell B.
    Ando, Nozomi
    CHEMICAL REVIEWS, 2017, 117 (12) : 7615 - 7672
  • [45] Detailed structural analysis of semiconductors with X-ray scattering
    Fewster, PF
    Holy, V
    Andrew, NL
    MATERIALS SCIENCE IN SEMICONDUCTOR PROCESSING, 2001, 4 (06) : 475 - 481
  • [46] Detailed structural characterisation of semiconductors with X-ray scattering
    Fewster, PF
    COMMAD 2000 PROCEEDINGS, 2000, : 1 - 8
  • [47] SHAPE OF MYOSIN-S-1 FROM X-RAY SOLUTION SCATTERING
    MENDELSON, RA
    KRETZSCHMAR, KM
    BIOPHYSICAL JOURNAL, 1979, 25 (02) : A20 - A20
  • [48] Extracting water and ion distributions from solution x-ray scattering experiments
    Nguyen, Hung T.
    Pabit, Suzette A.
    Pollack, Lois
    Case, David A.
    JOURNAL OF CHEMICAL PHYSICS, 2016, 144 (21):
  • [49] Advances in X-ray scattering: from solution SAXS to achievements with coherent beams
    Perez, Javier
    Nishino, Yoshinori
    CURRENT OPINION IN STRUCTURAL BIOLOGY, 2012, 22 (05) : 670 - 678
  • [50] Solution Structure of Alkaline NaBH4 Solution: A sight From X-ray Scattering
    Zhou, Yongquan
    Fang, Chunhui
    Fang, Yan
    Tao, Song
    PROCEEDINGS OF THE 2015 2ND INTERNATIONAL CONFERENCE ON MACHINERY, MATERIALS ENGINEERING, CHEMICAL ENGINEERING AND BIOTECHNOLOGY (MMECEB), 2016, 49 : 685 - 689