Identification of key biomarkers and related immune cell infiltration in cervical cancer tissue based on bioinformatics analysis

被引:0
作者
Zhu, Guang [1 ]
Xiong, Zhihui [1 ]
Chen, Wenzeng [1 ]
Zhu, Zhen [1 ]
Wang, Wei [1 ]
机构
[1] Tongde Hosp Zhejiang Prov, Dept Obstet, 234, Gucui Rd, Xihu Dist, Hangzhou 310012, Peoples R China
关键词
ROBUST RANK AGGREGATION; GENE; RADIOTHERAPY; ASSOCIATIONS; CONTRIBUTES; PROGRESSION; EXPRESSION; PROGNOSIS; DATABASE; KEGG;
D O I
10.1038/s41598-023-37346-z
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
Cervical cancer (CC) is the most common gynecological malignant tumor. Immunotherapy has become a new model for the treatment of CC, especially advanced and recurrent cancer. At present, many studies are exploring the safety and efficacy of immunotherapy for advanced or recurrent CC. In this study, CIBERSORT was used to analyze the immune cell infiltration in CC patients, to evaluate the proportion of immune cell types in CC samples, to quantify the cell composition of the immune response, and to analyze its prognostic value. The expression profile datasets of CC were downloaded from the GEO. The differentially expressed genes (DEGs) between CC and normal cervical tissues were identified via R software (version 4.1.1), and their functions and pathways were enriched and analyzed. A protein-protein interaction network was constructed to screen the hub gene. Immune cell infiltration in CC was analyzed via scientific reverse convolution algorithm (CIBERSORT), and the hub gene was analyzed via survival analysis to screen the diagnostic biomarkers of CC. A total of 144 DEGs and 12 hub genes were identified. DEGs are mainly involved in molecular functions such as serine-peptidase activity, serine-hydrolase activity, and chemokine activity. The enrichment pathway is closely related to the interaction between viral proteins and cytokines and cytokine receptors, the interleukin 17 signaling pathway, and chemokine signaling pathway. The immune cell infiltration analysis showed that T cells were the main infiltrating immune cells in CC, especially T cells CD8+ and CD4+ . The survival analysis of the hub gene showed that CEP55, MCM2, RFC4, and RRM2 had high diagnostic value. CEP55, MCM2, RFC4, and RRM2 can be used as diagnostic markers for CC. CD8+ and CD4+ T cells are closely related to the occurrence and development of CC.
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页数:11
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共 47 条
  • [1] Apu Mohd Nazmul Hasan, 2021, Tumour Biol, V43, P27, DOI 10.3233/TUB-200061
  • [2] Estimates of incidence and mortality of cervical cancer in 2018: a worldwide analysis
    Arbyn, Marc
    Weiderpass, Elisabete
    Bruni, Laia
    de Sanjose, Silvia
    Saraiya, Mona
    Ferlay, Jacques
    Bray, Freddie
    [J]. LANCET GLOBAL HEALTH, 2020, 8 (02): : E191 - E203
  • [3] Impact of multiple HPV infection on response to treatment and survival in patients receiving radical radiotherapy for cervical cancer
    Bachtiary, B
    Obermair, A
    Dreier, B
    Birner, P
    Breitenecker, G
    Knocke, TH
    Selzer, E
    Pötter, R
    [J]. INTERNATIONAL JOURNAL OF CANCER, 2002, 102 (03) : 237 - 243
  • [4] Bai L, 2020, INT J CLIN EXP PATHO, V13, P2984
  • [5] Identification of key biomarkers and immune infiltration in the synovial tissue of osteoarthritis by bioinformatics analysis
    Cai, Weisong
    Li, Haohuan
    Zhang, Yubiao
    Han, Guangtao
    [J]. PEERJ, 2020, 8
  • [6] The TPX2 gene is a promising diagnostic and therapeutic target for cervical cancer
    Chang, Haiping
    Wang, Jingzhi
    Tian, Yuan
    Xu, Jie
    Gou, Xiajuan
    Cheng, Jianxin
    [J]. ONCOLOGY REPORTS, 2012, 27 (05) : 1353 - 1359
  • [7] Chen BB, 2018, METHODS MOL BIOL, V1711, P243, DOI 10.1007/978-1-4939-7493-1_12
  • [8] cytoHubba: identifying hub objects and sub-networks from complex interactome
    Chin, Chia-Hao
    Chen, Shu-Hwa
    Wu, Hsin-Hung
    Ho, Chin-Wen
    Ko, Ming-Tat
    Lin, Chung-Yen
    [J]. BMC SYSTEMS BIOLOGY, 2014, 8
  • [9] Cervical cancer
    Cohen, Paul A.
    Jhingran, Anjua
    Oaknin, Ana
    Denny, Lynette
    [J]. LANCET, 2019, 393 (10167) : 169 - 182
  • [10] Immunotherapy With Radiotherapy and Chemoradiotherapy for Cervical Cancer
    Feng, Christine H.
    Mell, Loren K.
    Sharabi, Andrew B.
    McHale, Michael
    Mayadev, Jyoti S.
    [J]. SEMINARS IN RADIATION ONCOLOGY, 2020, 30 (04) : 273 - 280