Recent development of computational cluster analysis methods for single-molecule localization microscopy images

被引:10
作者
Hyun, Yoonsuk [1 ]
Kim, Doory [2 ,3 ,4 ,5 ]
机构
[1] Inha Univ, Dept Math, Incheon, South Korea
[2] Hanyang Univ, Dept Chem, Seoul, South Korea
[3] Hanyang Univ, Res Inst Convergence Basic Sci, Seoul, South Korea
[4] Hanyang Univ, Inst Nano Sci & Technol, Seoul, South Korea
[5] Hanyang Univ, Res Inst Nat Sci, Seoul, South Korea
基金
新加坡国家研究基金会;
关键词
Super-resolution fluorescence microscopy; Single-molecule localization microscopy; Cluster analysis; Machine learning; SUPERRESOLUTION IMAGING REVEALS; QUANTITATIVE-ANALYSIS; RECONSTRUCTION; LIMIT; PALM;
D O I
10.1016/j.csbj.2023.01.006
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
With the development of super-resolution imaging techniques, it is crucial to understand protein structure at the nanoscale in terms of clustering and organization in a cell. However, cluster analysis from single -molecule localization microscopy (SMLM) images remains challenging because the classical computational cluster analysis methods developed for conventional microscopy images do not apply to pointillism SMLM data, necessitating the development of distinct methods for cluster analysis from SMLM images. In this review, we discuss the development of computational cluster analysis methods for SMLM images by ca-tegorizing them into classical and machine-learning-based methods. Finally, we address possible future directions for machine learning-based cluster analysis methods for SMLM data.(c) 2023 The Authors. Published by Elsevier B.V. on behalf of Research Network of Computational and Structural Biotechnology. This is an open access article under the CC BY-NC-ND license (http://creative-commons.org/licenses/by-nc-nd/4.0/).
引用
收藏
页码:879 / 888
页数:10
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