Identification of a non-canonical transcription factor binding site using deep learning

被引：0
|
作者：
Proft, Sebastian [1 ,2 ,3 ,4 ]
Leiz, Janna [2 ,3 ,5 ,6 ]
Opitz, Robert [2 ,3 ,7 ]
Jung, Minie [1 ]
Heinemann, Udo [8 ]
Seelow, Dominik [1 ,2 ,3 ,4 ]
Schmidt-Ott, Kai [2 ,3 ,5 ,6 ]
Rutkiewicz, Maria [8 ,9 ]
机构：
[1] Berlin Inst Hlth, Exploratory Data Sci, Berlin, Germany
[2] Charite Univ Med Berlin, Berlin, Germany
[3] Free Univ Berlin, Berlin, Germany
[4] Humboldt Univ, Inst Med & Human Genet, Berlin, Germany
[5] Humboldt Univ, Dept Nephrol & Intens Care Med, Berlin, Germany
[6] Max Delbruck Ctr Mol Med Helmholtz Assoc MDC, Mol & Translat Kidney Res, Berlin, Germany
[7] Humboldt Univ, Inst Expt Pediat Endocrinol, Berlin, Germany
[8] Max Delbruck Ctr Mol Med, Macromol Struct & Interact, Berlin, Germany
[9] Polish Acad Sci, Inst Bioorgan Chem, Poznan, Poland
来源：
EUROPEAN JOURNAL OF HUMAN GENETICS | 2023年 / 31卷
关键词：
D O I：
暂无
中图分类号：
Q5 [生物化学]; Q7 [分子生物学];
学科分类号：
071010 ; 081704 ;
摘要：
P18.076.A
引用
收藏
页码：620 / 621
页数：2
相关论文
共 50 条
  • [1] Systematic identification of non-canonical transcription factor motifs
    Chumpitaz-Diaz, Luis
    Samee, Md Abul Hassan
    Pollard, Katherine S.
    BMC MOLECULAR AND CELL BIOLOGY, 2021, 22 (01)
  • [2] Systematic identification of non-canonical transcription factor motifs
    Luis Chumpitaz-Diaz
    Md. Abul Hassan Samee
    Katherine S. Pollard
    BMC Molecular and Cell Biology, 22
  • [3] Non-canonical Binding Site for Bacterial Initiation Factor 3 on the Large Ribosomal Subunit
    Goyal, Akanksha
    Belardinelli, Riccardo
    Rodnina, Marina V.
    CELL REPORTS, 2017, 20 (13): : 3113 - 3122
  • [4] Discovery of a non-canonical GRHL1 binding site using deep convolutional and recurrent neural networks
    Proft, Sebastian
    Leiz, Janna
    Heinemann, Udo
    Seelow, Dominik
    Schmidt-Ott, Kai M.
    Rutkiewicz, Maria
    BMC GENOMICS, 2023, 24 (01)
  • [5] Discovery of a non-canonical GRHL1 binding site using deep convolutional and recurrent neural networks
    Sebastian Proft
    Janna Leiz
    Udo Heinemann
    Dominik Seelow
    Kai M. Schmidt-Ott
    Maria Rutkiewicz
    BMC Genomics, 24
  • [6] A non-canonical DNA structure is a binding motif for the transcription factor SP1 in vitro
    Raiber, Eun-Ang
    Kranaster, Ramon
    Lam, Enid
    Nikan, Mehran
    Balasubramanian, Shankar
    NUCLEIC ACIDS RESEARCH, 2012, 40 (04) : 1499 - 1508
  • [7] Zinc cluster transcription factors frequently activate target genes using a non-canonical half-site binding mode
    Recio, Pamela S.
    Mitra, Nikhil J.
    Shively, Christian A.
    Song, David
    Jaramillo, Grace
    Lewis, Kristine Shady
    Chen, Xuhua
    Mitra, Robi D.
    NUCLEIC ACIDS RESEARCH, 2023, 51 (10) : 5006 - 5021
  • [8] Robust Transcription Factor Binding Site Prediction Using Deep Neural Networks
    Geete, Kanu
    Pandey, Manish
    CURRENT BIOINFORMATICS, 2020, 15 (10) : 1137 - 1152
  • [9] Ubiquitylation on Canonical and Non-canonical Sites Targets the Transcription Factor Neurogenin for Ubiquitin-mediated Proteolysis
    Vosper, Jonathan M. D.
    McDowell, Gary S.
    Hindley, Christopher J.
    Fiore-Heriche, Christelle S.
    Kucerova, Romana
    Horan, Ian
    Philpott, Anna
    JOURNAL OF BIOLOGICAL CHEMISTRY, 2009, 284 (23) : 15458 - 15468
  • [10] Transcription factor binding site identification using the self-organizing map
    Mahony, S
    Hendrix, D
    Golden, A
    Smith, TJ
    Rokhsar, DS
    BIOINFORMATICS, 2005, 21 (09) : 1807 - 1814
12345