Alkalicoccobacillus porphyridii sp. nov., isolated from a marine red alga, reclassification of Shouchella plakortidis and Shouchella gibsonii as Alkalicoccobacillus plakortidis comb. nov. and Alkalicoccobacillus gibsonii comb. nov., and emended description of the Alkalicoccobacillus Joshi et al. 2022

被引:4
作者
Kim, Kyung Hyun [1 ,2 ]
Han, Dong Min [1 ]
Lee, Jae Kyeong [1 ]
Jeon, Che Ok [1 ]
机构
[1] Chung Ang Univ, Dept Life Sci, Seoul 06974, South Korea
[2] Hannam Univ, Dept Biol Sci & Biotechnol, Daejeon 34054, South Korea
关键词
Alkalicoccobacillus porphyridii; new taxa; red alga; Alkalicoccobacillus plakortidis; Alkalicoccobacillus gibsonii; reclassification; GENOME ANNOTATION; BACTERIAL; ALGORITHM; PIPELINE;
D O I
10.1099/ijsem.0.006019
中图分类号
Q93 [微生物学];
学科分类号
071005 ; 100705 ;
摘要
A Gram- stain-positive alkali-tolerant and strictly aerobic bacterium, designated strain P16T, was isolated from a marine red alga, Porphyridium cruentum, in the Yellow Sea, Republic of Korea. Cells were motile rods with peritrichous flagella and exhibited catalase and oxidase activities. The optimal growth of strain P16T was observed to occur at 30 degrees C and pH 8.0 and in the presence of 2.0 % (w/v) NaCl. Menaquinone- 7 was identified as the sole respiratory quinone. Strain P16T contained anteiso-C15:0, iso-C15:0, iso-C14: 0 and iso-C16:0, and diphosphatidylglycerol, phosphatidylglycerol and phosphatidylethanolamine as major cellular fatty acids and polar lipids, respectively. The G+C content of strain P16T was 40.8 mol%. Strain P16T was most closely related to Shouchella plakortidis P203T, Shouchella gibsonii DSM 8722T and Alkalicoccobacillus murimartini LMG 21005T with 98.1, 98.1 and 98.0 % 16S rRNA gene sequence similarities, respectively. Phylogenetic analyses based on 16S rRNA gene and genome sequences revealed that strain P16T, S, plakortidis, S. gibsonii and A. murimartini formed a single phylogenetic lineage cluster, and genomic relatedness analyses showed that they are different species. Based on phylogenetic, phenotypic, chemotaxonomic and molecular features, strain P16T represents a novel species of the genus Alkalicoccobacillus, for which the name Alkalicoccobacillus porphyridii sp. nov. is proposed. The type strain is P16T (=KACC 19520T=JCM 32931T). In addition, S. plakortidis and S. gibsonii are reclassified as Alkalicoccobacillus plakortidis comb. nov. (type strain P203T=DSM 19153T=NCIMB 14288T) and Alkalicoccobacillus gibsonii comb. nov. (type strain PN- 109T=ATCC 700164T=DSM 8722T=KCCM 41407T), respectively.
引用
收藏
页数:10
相关论文
共 34 条
  • [21] A Proposed Genus Boundary for the Prokaryotes Based on Genomic Insights
    Qin, Qi-Long
    Xie, Bin-Bin
    Zhang, Xi-Ying
    Chen, Xiu-Lan
    Zhou, Bai-Cheng
    Zhou, Jizhong
    Oren, Aharon
    Zhang, Yu-Zhong
    [J]. JOURNAL OF BACTERIOLOGY, 2014, 196 (12) : 2210 - 2215
  • [22] Shifting the genomic gold standard for the prokaryotic species definition
    Richter, Michael
    Rossello-Mora, Ramon
    [J]. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2009, 106 (45) : 19126 - 19131
  • [23] Sambrook J., 2001, MOL CLONING LAB MANU
  • [24] Sasser M., 1990, USFCC News Lett, P1
  • [25] Schaeffer A B, 1933, Science, V77, P194, DOI 10.1126/science.77.1990.194
  • [26] PEPTIDOGLYCAN TYPES OF BACTERIAL CELL-WALLS AND THEIR TAXONOMIC IMPLICATIONS
    SCHLEIFER, KH
    KANDLER, O
    [J]. BACTERIOLOGICAL REVIEWS, 1972, 36 (04) : 407 - 477
  • [27] Smibert Robert M., 1994, P607
  • [28] Stackebrandt E, 2002, INT J SYST EVOL MICR, V52, P1043, DOI [10.1099/ijs.0.02360-0, 10.1099/00207713-52-3-1043]
  • [29] Stackebrandt E., 2006, Microbiology Today, V33, P152
  • [30] MEGA11 Molecular Evolutionary Genetics Analysis Version 11
    Tamura, Koichiro
    Stecher, Glen
    Kumar, Sudhir
    [J]. MOLECULAR BIOLOGY AND EVOLUTION, 2021, 38 (07) : 3022 - 3027