Quantification of the Strength of π-Noncovalent Interactions in Molecular Balances using Density Functional Methods

被引:2
作者
Nunar, Luka [1 ]
Aliev, Abil E. [1 ]
机构
[1] UCL, Dept Chem, 20 Gordon St, London WC1H 0AJ, England
来源
CHEMISTRY-METHODS | 2023年 / 3卷 / 01期
关键词
conformational analysis; density functional methods; noncovalent interactions; pi-systems; structure; FACE AROMATIC INTERACTIONS; THROUGH-SPACE INTERACTIONS; TO-FACE; THERMOCHEMICAL KINETICS; TORSION BALANCE; ATOMIC CHARGES; BASIS-SETS; SULFUR; DESIGN; MODEL;
D O I
10.1002/cmtd.202200044
中图分类号
O6 [化学];
学科分类号
0703 ;
摘要
Different molecular balances were designed previously to compare noncovalent interactions. However, some balances are difficult to synthesise and there is a need for developing a computational approach. In this work, we probe noncovalent interactions of pi systems using DFT methods to assess their reliability in reproducing experimentally measured conformer populations. Based on our results, the PW6B95D3 functional performed best, followed by M11L and omega B97XD. Additionally, the simulation of the rotation of the hydroxyl group revealed stabilising OH center dot center dot center dot Alkyne and OH center dot center dot center dot Nitrile interactions that are difficult to identify experimentally. These methods were then applied to compare the strengths of sulfur center dot center dot center dot pi interactions in molecules which have not been explored experimentally. Compared to the hydroxyl counterpart, the simulation of the thiol group rotation showed that the geometry of the conformer with the two sulfur lone pairs oriented towards the aromatic ring or the double bond is stabilised, suggesting that S(LP)center dot center dot center dot pi interactions can be attractive in nature. The ability of sulfur to rearrange its electronic surrounding to form an attractive interaction with pi systems, including those with either electron-donating or withdrawing groups, was also confirmed. Overall, the results show a promising future for both qualitative and quantitative assessments of the strengths of noncovalent interactions using selected DFT techniques.
引用
收藏
页数:13
相关论文
共 50 条
  • [31] Accurate predictions of C-SO2R bond dissociation enthalpies using density functional theory methods
    Yu, Hai-Zhu
    Fu, Fang
    Zhang, Liang
    Fu, Yao
    Dang, Zhi-Min
    Shi, Jing
    [J]. PHYSICAL CHEMISTRY CHEMICAL PHYSICS, 2014, 16 (38) : 20964 - 20970
  • [32] Explicit Polarization (X-Pol) Potential Using ab Initio Molecular Orbital Theory and Density Functional Theory
    Song, Lingchun
    Han, Jaebeom
    Lin, Yen-lin
    Xie, Wangshen
    Gao, Jiali
    [J]. JOURNAL OF PHYSICAL CHEMISTRY A, 2009, 113 (43) : 11656 - 11664
  • [33] Stable structures and absorption spectra for SixOy molecular clusters using density functional theory
    Huang, L.
    Lambrakos, S. G.
    Massa, L.
    [J]. STRUCTURAL CHEMISTRY, 2017, 28 (05) : 1573 - 1580
  • [34] Semiclassical Nonadiabatic Molecular Dynamics Using Linearized Pair-Density Functional Theory
    Hennefarth, Matthew R.
    Truhlar, Donald G.
    Gagliardi, Laura
    [J]. JOURNAL OF CHEMICAL THEORY AND COMPUTATION, 2024, 20 (20) : 8741 - 8748
  • [35] Exploring molecular flexibility and the interactions of Quercetin derivatives in the active site of α-glucosidase using molecular docking and charge density analysis
    Qi, Y. J.
    Zhao, Y. M.
    Lu, H. N.
    Wang, X. E.
    Jin, N. Z.
    [J]. COMPUTATIONAL AND THEORETICAL CHEMISTRY, 2016, 1094 : 55 - 68
  • [36] Study of HSA interactions with arachidonic acid using spectroscopic methods revealing molecular dynamics of HSA-AA interactions
    Valojerdi, Fereshte Mahdizade
    Farasat, Alireza
    Shariatifar, Hanifeh
    Gheibi, Nematollah
    [J]. BIOMEDICAL REPORTS, 2020, 12 (03) : 125 - 133
  • [37] Density Functional Theory for Molecular and Periodic Systems Using Density Fitting and Continuous Fast Multipole Method: Analytical Gradients
    Lazarski, Roman
    Burow, Asbjoern Manfred
    Grajciar, Lukas
    Sierka, Marek
    [J]. JOURNAL OF COMPUTATIONAL CHEMISTRY, 2016, 37 (28) : 2518 - 2526
  • [38] Accurate prediction of hydration free energies and solvation structures using molecular density functional theory with a simple bridge functional
    Borgis, Daniel
    Luukkonen, Sohvi
    Belloni, Luc
    Jeanmairet, Guillaume
    [J]. JOURNAL OF CHEMICAL PHYSICS, 2021, 155 (02)
  • [39] Molecular and Spectroscopic Insights into a Metal Salt-Based Deep Eutectic Solvent: A Combined Quantum Theory of Atoms in Molecules, Noncovalent Interaction, and Density Functional Theory Study
    Mishra, Dhirendra Kumar
    Gopakumar, Gopinadhanpillai
    Pugazhenthi, Gopal
    Rao, Cherukuri Venkata Siva Brahmmananda
    Nagarajan, Sivaraman
    Banerjee, Tamal
    [J]. JOURNAL OF PHYSICAL CHEMISTRY A, 2021, 125 (44) : 9680 - 9690
  • [40] Coupling molecular density functional theory with converged selected configuration interaction methods to study excited states in aqueous solution
    Labat, Maxime
    Giner, Emmanuel
    Jeanmairet, Guillaume
    [J]. JOURNAL OF CHEMICAL PHYSICS, 2024, 161 (01)