Bacteriophages of the Order Crassvirales: What Do We Currently Know about This Keystone Component of the Human Gut Virome?

被引：17
作者：
Smith, Linda
Goldobina, Ekaterina
Govi, Bianca
Shkoporov, Andrey N. [1 ]
机构：
[1] Univ Coll Cork, Dept Med, APC Microbiome Ireland, Cork T12 YT20, Ireland
来源：
BIOMOLECULES | 2023年 / 13卷 / 04期
基金：
英国惠康基金; 爱尔兰科学基金会; 欧洲研究理事会;
关键词：
Crassvirales; virome; human gut microbiome; metagenomics; HOST-RANGE; BACTERIA; PHAGE; CRASSPHAGE; COEXISTENCE; PREDICTION; DIVERSITY; VIRUSES; SAMPLES;
D O I：
10.3390/biom13040584
中图分类号：
Q5 [生物化学]; Q7 [分子生物学];
学科分类号：
071010 ; 081704 ;
摘要：
The order Crassvirales comprises dsDNA bacteriophages infecting bacteria in the phylum Bacteroidetes that are found in a variety of environments but are especially prevalent in the mammalian gut. This review summarises available information on the genomics, diversity, taxonomy, and ecology of this largely uncultured viral taxon. With experimental data available from a handful of cultured representatives, the review highlights key properties of virion morphology, infection, gene expression and replication processes, and phage-host dynamics.
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页数：20
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共 105 条
  • [1] Single Virus Genomics: A New Tool for Virus Discovery
    Allen, Lisa Zeigler
    Ishoey, Thomas
    Novotny, Mark A.
    McLean, Jeffrey S.
    Lasken, Roger S.
    Williamson, Shannon J.
    [J]. PLOS ONE, 2011, 6 (03):
  • [2] Studying Vertical Microbiome Transmission from Mothers to Infants by Strain-Level Metagenomic Profiling
    Asnicar, Francesco
    Manara, Serena
    Zolfo, Moreno
    Duy Tin Truong
    Scholz, Matthias
    Armanini, Federica
    Ferretti, Pamela
    Gorfer, Valentina
    Pedrotti, Anna
    Tett, Adrian
    Segata, Nicola
    [J]. MSYSTEMS, 2017, 2 (01)
  • [3] Bacteriophage adhering to mucus provide a non-host-derived immunity
    Barr, Jeremy J.
    Auro, Rita
    Furlan, Mike
    Whiteson, Katrine L.
    Erb, Marcella L.
    Pogliano, Joe
    Stotland, Aleksandr
    Wolkowicz, Roland
    Cutting, Andrew S.
    Doran, Kelly S.
    Salamon, Peter
    Youle, Merry
    Rohwer, Forest
    [J]. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2013, 110 (26) : 10771 - 10776
  • [4] Bayfield O., 2022, RES SQUARE, DOI [10.21203/rs.3.rs-1898492/v1, DOI 10.21203/RS.3.RS-1898492/V1]
  • [5] Thousands of previously unknown phages discovered in whole-community human gut metagenomes
    Benler, Sean
    Yutin, Natalya
    Antipov, Dmitry
    Rayko, Mikhail
    Shmakov, Sergey
    Gussow, Ayal B.
    Pevzner, Pavel
    Koonin, Eugene, V
    [J]. MICROBIOME, 2021, 9 (01)
  • [6] Assignment of virus and antimicrobial resistance genes to microbial hosts in a complex microbial community by combined long-read assembly and proximity ligation
    Bickhart, Derek M.
    Watson, Mick
    Koren, Sergey
    Panke-Buisse, Kevin
    Cersosimo, Laura M.
    Press, Maximilian O.
    Van Tassell, Curtis P.
    Van Kessel, Jo Ann S.
    Haley, Bradd J.
    Kim, Seon Woo
    Heiner, Cheryl
    Suen, Garret
    Bakshy, Kiranmayee
    Liachko, Ivan
    Sullivan, Shawn T.
    Myer, Phillip R.
    Ghurye, Jay
    Pop, Mihai
    Weimer, Paul J.
    Phillippy, Adam M.
    Smith, Timothy P. L.
    [J]. GENOME BIOLOGY, 2019, 20 (01)
  • [7] Widespread stop-codon recoding in bacteriophages may regulate translation of lytic genes
    Borges, Adair L.
    Lou, Yue Clare
    Sachdeva, Rohan
    Al-Shayeb, Basem
    Penev, Petar, I
    Jaffe, Alexander L.
    Lei, Shufei
    Santini, Joanne M.
    Banfield, Jillian F.
    [J]. NATURE MICROBIOLOGY, 2022, 7 (06) : 918 - +
  • [8] crAssphage genomes identified in fecal samples of an adult and infants with evidence of positive genomic selective pressure within tail protein genes
    Brown, Bryan P.
    Chopera, Denis
    Havyarimana, Enock
    Wendoh, Jerome
    Jaumdally, Shameem
    Nyangahu, Donald D.
    Gray, Clive M.
    Martin, Darren P.
    Varsani, Arvind
    Jaspan, Heather B.
    [J]. VIRUS RESEARCH, 2021, 292
  • [9] Massive expansion of human gut bacteriophage diversity
    Camarillo-Guerrero, Luis F.
    Almeida, Alexandre
    Rangel-Pineros, Guillermo
    Finn, Robert D.
    Lawley, Trevor D.
    [J]. CELL, 2021, 184 (04) : 1098 - +
  • [10] Infection with Bacteroides Phage BV01 Alters the Host Transcriptome and Bile Acid Metabolism in a Common Human Gut Microbe
    Campbell, Danielle E.
    Ly, Lindsey K.
    Ridlon, Jason M.
    Hsiao, Ansel
    Whitaker, Rachel J.
    Degnan, Patrick H.
    [J]. CELL REPORTS, 2020, 32 (11):
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