An X-STRs analysis of the Iraqi Sorani Kurds

被引:2
作者
M. Albarzinji, Balnd [1 ]
Hadi, Shams [2 ]
Ismael, Bahez [1 ]
Barqee, Ahmed [1 ]
Hadi, Abdullah [2 ]
Lazim, Hayder [3 ]
机构
[1] Kurdistan Inst Strateg Studies & Sci Res KISSR, Sulaymaniyah, Iraq
[2] Univ Cent Lancashire, Med Sch, Preston, England
[3] Edge Hill Univ, Sch Med, Fac Hlth Social Care & Med FHSCM, Ormskirk, England
来源
PLOS ONE | 2023年 / 18卷 / 11期
关键词
POPULATION-DATA; HAPLOTYPE DIVERSITY; GENETIC-ANALYSIS; 3; SETS; LOCI; MARKERS; CHROMOSOME; SAMPLES; PROGRAM; ALLELE;
D O I
10.1371/journal.pone.0294973
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
A database for the Iraqi Sorani Kurds, specifically focused on the 12 X-short tandem repeat (STR) loci, has been developed to fascilitate forensic and population genetics investigations. The present study involved genotyping 117 unrelated individuals from the Sorani Kurds ethnic group using the Investigator Argus X-12 QS kit. The analysis revealed that the DXS10135 locus exhibited the highest degree of polymorphism, as indicated by a polymorphism information content (PIC) value of 0.94565 and a gene diversity (GD) value of 0.95623. Conversely, the DXS8378 locus displayed the lowest level of polymorphism, with a PIC value of 0.61026 and a GD value of 0.68170. Notably, two individuals were found to possess a rare allele (allele = 6) at the DXS8378 locus, which was not included in the allelic ladder of the kit. Furthermore, a significant linkage disequilibrium (LD) (p < 0.05/117) was observed between the DXS10103 and DXS10101 loci on linkage group 3 (LG3). The ancestral composition of the five primary geographic regions, namely Africa, Middle East, East Asia, Europe, and South America, was determined through the utilization of the F-ST/F-ST(max) ratio. The findings of this analysis revealed that the Middle Eastern populations exhibited the lowest F-ST/F-ST(max) ratio, measuring at 0.23243, indicating a relatively lower ancestral diversity. Conversely, the European populations showcased the highest F-ST/F-ST(max) ratio, measuring at 0.27122, indicative of a greater ancestral diversity within this region. Additionally, the allelic richness indicators, namely distinctive and private alleles, indicated that Africa and the Middle East displayed the highest levels, while Far East Asia exhibited the lowest. This analysis supports the hypothesis of repeated founder effects during outward migrations, as evidenced by both the ancestry variability and the allelic richness. Consequently, the findings of this study have important implications for forensic genetics and population genetics research, particularly in relation to the consideration of genetic predispositions within specific ethnic groups.
引用
收藏
页数:18
相关论文
共 70 条
  • [1] Al-Snan NR., 2019, BIORXIV, P790915, DOI [10.1101/790915, DOI 10.1101/790915]
  • [2] Population genetic study of 17 Y-STR Loci of the Sorani Kurds in the Province of Sulaymaniyah, Iraq
    Albarzinji, Balnd M.
    Abdulkarim, Farhad M.
    Hussein, Shaho A.
    Rashid, Dlshad
    Lazim, Hayder
    [J]. BMC GENOMICS, 2022, 23 (01)
  • [3] Allelic and haplotype diversity of 12 X-STRs in the United Arab Emirates
    Almarri, Mohamed A.
    Lootah, Reem A.
    [J]. FORENSIC SCIENCE INTERNATIONAL-GENETICS, 2018, 33 : E4 - E6
  • [4] Population genetic analysis of 12 X-chromosomal STRs in a Swiss sample
    Bottinelli, Michel
    Gouy, Alexandre
    Utz, Silvia
    Zieger, Martin
    [J]. INTERNATIONAL JOURNAL OF LEGAL MEDICINE, 2022, 136 (02) : 561 - 563
  • [5] Population data of 12 X-STR loci in a North of Portugal sample
    Caine, Laura
    Costa, Sergio
    Pinheiro, Maria F.
    [J]. INTERNATIONAL JOURNAL OF LEGAL MEDICINE, 2013, 127 (01) : 63 - 64
  • [6] Allele and haplotype frequencies of 12 X-STRs in Mexican population
    Cortes-Trujillo, Iran
    Zuniga-Chiquette, Fernando
    Ramos-Gonzalez, Benito
    de Loures Chavez-Briones, Maria
    Liliana Islas-Gonzalez, Karely
    Adrian Betancourt-Guerra, David
    Peralta-Coria, Rocio
    Martinez-Cortes, Gabriela
    Rangel-Villalobos, Hector
    [J]. FORENSIC SCIENCE INTERNATIONAL-GENETICS, 2019, 38 : E11 - E13
  • [7] Desmarais D, 1998, J FORENSIC SCI, V43, P1046
  • [8] Forensic typing of short tandem repeat markers on the X and Y chromosomes
    Diegoli, Toni M.
    [J]. FORENSIC SCIENCE INTERNATIONAL-GENETICS, 2015, 18 : 140 - 151
  • [9] A glimpse at the intricate mosaic of ethnicities from Mesopotamia: Paternal lineages of the Northern Iraqi Arabs, Kurds, Syriacs, Turkmens and Yazidis
    Dogan, Serkan
    Gurkan, Cemal
    Dogan, Mustafa
    Balkaya, Hasan Emin
    Tunc, Ramazan
    Demirdov, Damla Kanliada
    Ameen, Nihad Ahmed
    Marjanovic, Damir
    [J]. PLOS ONE, 2017, 12 (11):
  • [10] STRUCTURE HARVESTER: a website and program for visualizing STRUCTURE output and implementing the Evanno method
    Earl, Dent A.
    vonHoldt, Bridgett M.
    [J]. CONSERVATION GENETICS RESOURCES, 2012, 4 (02) : 359 - 361