Point-of-care real-time DNA detection device for SARS-CoV-2 from clinical samples

被引:3
作者
Presti, Damian [1 ]
Bergier, Julian [1 ]
Ripoll, Lucas [1 ]
Borio, Cristina [1 ]
Torchia, Gustavo A. [2 ]
Bilen, Marcos [1 ]
机构
[1] Univ Nacl Quilmes, Lab Ingn Genet & Biol Celulary Mol, Roque Saenz Pena 352, Bernal, Buenos Aires, Argentina
[2] UNLP, Ctr Invest Opt CONICET CIC BA, Camino Centenario & 506, Manuel B Gonnet, Argentina
关键词
POLYMERASE-CHAIN-REACTION;
D O I
10.1364/JOSAA.479058
中图分类号
O43 [光学];
学科分类号
070207 ; 0803 ;
摘要
Since the global pandemic of SARS-CoV-2, people's health and the economic support of their countries have been seriously affected. It was necessary to develop a low-cost and faster diagnostic tool that allows the evaluation of symptomatic patients. Point-of-care testing and point-of-need testing systems have been recently developed to solve these drawbacks, providing accurate and rapid diagnostics at field level or at the site of outbreaks. In this work, a bio-photonic device has been developed for the diagnosis of COVID-19. The device is used with an iso-thermal system (Easy Loop Amplification based) for the detection of SARS-CoV-2. The performance of the device was evaluated in the detection of a SARS-CoV-2 RNA sample panel, showing an analytical sensitivity comparable to the reference method of quantitative reverse transcription polymerase chain reaction used commercially. In addition, the device was mainly built with simple and low-cost components; therefore, it is possible to obtain a high-efficiency and low-cost instrument. The device excites the sample to be analyzed with a semiconductor laser with a specific wavelength, thus triggering spontaneous emission of the fluorophore bound to the specific probe. The emitted fluorescence is suitably managed by using interferential filters. Under these conditions, a signal is reg-istered and, depending on this level, defines the case as positive or negative. All the analysis is done autonomously inside the developed device through an integrated control system, and it is connected to a portable device to show the results wirelessly. (c) 2023 Optica Publishing Group
引用
收藏
页码:C1 / C7
页数:7
相关论文
共 50 条
  • [21] Cost-Effective Pooling of DNA from Nasopharyngeal Swab Samples for Large-Scale Detection of Bacteria by Real-Time PCR
    Edouard, Sophie
    Prudent, Elsa
    Gautret, Philippe
    Memish, Ziad A.
    Raoult, Didier
    JOURNAL OF CLINICAL MICROBIOLOGY, 2015, 53 (03) : 1002 - 1004
  • [22] Mini-thermal platform integrated with microfluidic device with on-site detection for real-time DNA amplification
    Kulkarni, Madhusudan B.
    Goel, Sanket
    BIOTECHNIQUES, 2023, 74 (04) : 158 - 171
  • [23] Evaluation of four commercial real-time RT-PCR kits for the detection of dengue viruses in clinical samples
    Najioullah, Fatiha
    Viron, Florent
    Cesaire, Raymond
    VIROLOGY JOURNAL, 2014, 11
  • [24] Broadly reactive TaqMan® assay for real-time RT-PCR detection of rotavirus in clinical and environmental samples
    Jothikumar, N.
    Kang, G.
    Hill, V. R.
    JOURNAL OF VIROLOGICAL METHODS, 2009, 155 (02) : 126 - 131
  • [25] Specific Detection of Rinderpest Virus by Real-Time Reverse Transcription-PCR in Preclinical and Clinical Samples from Experimentally Infected Cattle
    Carrillo, C.
    Prarat, M.
    Vagnozzi, A.
    Calahan, J. D.
    Smoliga, G.
    Nelson, W. M.
    Rodriguez, L. L.
    JOURNAL OF CLINICAL MICROBIOLOGY, 2010, 48 (11) : 4094 - 4101
  • [26] Development of a duplex real-time PCR for the detection of Rickettsia spp. and typhus group rickettsia in clinical samples
    Giulieri, Stefano
    Jaton, Katia
    Cometta, Alain
    Trellu, Laurence T.
    Greub, Gilbert
    FEMS IMMUNOLOGY AND MEDICAL MICROBIOLOGY, 2012, 64 (01): : 92 - 97
  • [27] Evaluation of Four Commercial Kits for SARS-CoV-2 Real-Time Reverse-Transcription Polymerase Chain Reaction Approved by Emergency-Use-Authorization in Korea
    Hur, Kyu-Hwa
    Park, Kuenyoul
    Lim, Youngkuen
    Jeong, Yun Sil
    Sung, Heungsup
    Kim, Mi-Na
    FRONTIERS IN MEDICINE, 2020, 7
  • [28] Multiple detection and spread of novel strains of the SARS-CoV-2 B.1.177 (B.1.177.75) lineage that test negative by a commercially available nucleocapsid gene real-time RT-PCR
    Amato, Laura
    Jurisic, Lucija
    Puglia, Ilaria
    Di Lollo, Valeria
    Curini, Valentina
    Torzi, Giuseppe
    Di Girolamo, Arturo
    Mangone, Iolanda
    Mancinelli, Adamo
    Decaro, Nicola
    Calistri, Paolo
    Di Giallonardo, Francesca
    Lorusso, Alessio
    D'Alterio, Nicola
    EMERGING MICROBES & INFECTIONS, 2021, 10 (01) : 1148 - 1155
  • [29] Two tetraplex real-time PCR for the detection and quantification of DNA from eight allergens in food
    Koeppel, Rene
    Dvorak, Veronika
    Zimmerli, Franziska
    Breitenmoser, Alda
    Eugster, Albert
    Waiblinger, Hans-Ulrich
    EUROPEAN FOOD RESEARCH AND TECHNOLOGY, 2010, 230 (03) : 367 - 374
  • [30] Surveillance of Acute SARS-CoV-2 Infections in School Children and Point-Prevalence During a Time of High Community Transmission in Switzerland
    Kriemler, Susi
    Ulyte, Agne
    Ammann, Priska
    Peralta, Gabriela P.
    Berger, Christoph
    Puhan, Milo A.
    Radtke, Thomas
    FRONTIERS IN PEDIATRICS, 2021, 9