Human thymopoiesis produces polyspecific CD8+ α/β T cells responding to multiple viral antigens

被引:6
作者
Quiniou, Valentin [1 ,2 ,3 ,9 ]
Barennes, Pierre [1 ,2 ,3 ]
Mhanna, Vanessa [1 ,2 ,3 ]
Stys, Paul [1 ]
Vantomme, Helene [1 ,2 ,3 ]
Zhou, Zhicheng [4 ]
Martina, Federica [2 ,3 ]
Coatnoan, Nicolas [2 ,3 ]
Barbie, Michele [2 ,3 ]
Pham, Hang-Phuong [5 ,9 ]
Clemenceau, Beatrice [6 ]
Vie, Henri [6 ]
Shugay, Mikhail [7 ]
Six, Adrien [1 ]
Brandao, Barbara [4 ]
Mallone, Roberto [4 ,8 ]
Mariotti-Ferrandiz, Encarnita [1 ]
Klatzmann, David [1 ,2 ,3 ]
机构
[1] Sorbonne Univ, INSERM, Immunol Immunopathol Immunotherapy, Paris, France
[2] Hop La Pitie Salpetriere, AP HP, Clin Invest Ctr Biotherapies CIC BTi, Paris, France
[3] Immunol Inflammat Infectiol & Dermatol Dept 3iD, Paris, France
[4] Univ Paris Cite, Inst Cochin, CNRS, INSERM, Paris, France
[5] ILTOO Pharma, Stat Dept, Paris, France
[6] Univ Nantes, CRCINA, INSERM, CNRS,Univ Angers, Nantes, France
[7] Skoltech, Ctr Life Sci, Moscow, Russia
[8] Cochin Hosp, Assistance Publ Hop Paris, Serv Diabetol & Immunol Clin, Paris, France
[9] Parean Biotechnol, St Malo, France
来源
ELIFE | 2023年 / 12卷
基金
欧洲研究理事会;
关键词
TCR; Thymopoiesis; polyspecificity; heterologous immunity; cross-reactivity; autoimmunity; immunopathology; Human; Mouse; ADAPTIVE IMMUNITY; CROSS-REACTIVITY; REPERTOIRE; SELECTION; SPECIFICITY; DIVERSITY; INFERENCE; TETRAMERS; SOFTWARE; SURVIVAL;
D O I
10.7554/eLife.81274
中图分类号
Q [生物科学];
学科分类号
07 ; 0710 ; 09 ;
摘要
T-cell receptors (TCRs) are formed by stochastic gene rearrangements, theoretically generating >10(19) sequences. They are selected during thymopoiesis, which releases a repertoire of about 10(8) unique TCRs per individual. How evolution shaped a process that produces TCRs that can effectively handle a countless and evolving set of infectious agents is a central question of immunology. The paradigm is that a diverse enough repertoire of TCRs should always provide a proper, though rare, specificity for any given need. Expansion of such rare T cells would provide enough fighters for an effective immune response and enough antigen-experienced cells for memory. We show here that human thymopoiesis releases a large population of clustered CD8(+) T cells harboring alpha/beta paired TCRs that (i) have high generation probabilities and (ii) a preferential usage of some V and J genes, (iii) which CDR3 are shared between individuals, and (iv) can each bind and be activated by multiple unrelated viral peptides, notably from EBV, CMV, and influenza. These polyspecific T cells may represent a first line of defense that is mobilized in response to infections before a more specific response subsequently ensures viral elimination. Our results support an evolutionary selection of polyspecific alpha/beta TCRs for broad antiviral responses and heterologous immunity.
引用
收藏
页数:24
相关论文
共 69 条
[1]   The survival benefit of measles immunization may not be explained entirely by the prevention of measles disease: a community study from rural Bangladesh [J].
Aaby, P ;
Bhuiya, A ;
Nahar, L ;
Knudsen, K ;
de Francisco, A ;
Strong, M .
INTERNATIONAL JOURNAL OF EPIDEMIOLOGY, 2003, 32 (01) :106-115
[2]   Non-specific effects of standard measles vaccine at 4.5 and 9 months of age on childhood mortality: randomised controlled trial [J].
Aaby, Peter ;
Martins, Cesario L. ;
Garly, May-Lill ;
Bale, Carlito ;
Andersen, Andreas ;
Rodrigues, Amabelia ;
Ravn, Henrik ;
Lisse, Ida M. ;
Benn, Christine S. ;
Whittle, Hilton C. .
BMJ-BRITISH MEDICAL JOURNAL, 2010, 341 :1262
[3]   Structural interplay between germline interactions and adaptive recognition determines the bandwidth of TCR-peptide-MHC cross-reactivity [J].
Adams, Jarrett J. ;
Narayanan, Samanthi ;
Birnbaum, Michael E. ;
Sidhu, Sachdev S. ;
Blevins, Sydney J. ;
Gee, Marvin H. ;
Sibener, Leah V. ;
Baker, Brian M. ;
Kranz, David M. ;
Garcia, K. Christopher .
NATURE IMMUNOLOGY, 2016, 17 (01) :87-+
[4]   CD8+ T Cells Variably Recognize Native Versus Citrullinated GRP78 Epitopes in Type 1 Diabetes [J].
Azoury, Marie Eliane ;
Samassa, Fatoumata ;
Buitinga, Mijke ;
Nigi, Laura ;
Brusco, Noemi ;
Callebaut, Aisha ;
Giraud, Matthieu ;
Irla, Magali ;
Lalanne, Ana Ines ;
Carre, Alexia ;
Afonso, Georgia ;
Zhou, Zhicheng ;
Brandao, Barbara ;
Colli, Maikel L. ;
Sebastiani, Guido ;
Dotta, Francesco ;
Nakayama, Maki ;
Eizirik, Decio L. ;
You, Sylvaine ;
Pinto, Sheena ;
Mamula, Mark J. ;
Verdier, Yann ;
Vinh, Joelle ;
Buus, Soren ;
Mathieu, Chantal ;
Overbergh, Lut ;
Mallone, Roberto .
DIABETES, 2021, 70 (12) :2879-2891
[5]   Peptides Derived From Insulin Granule Proteins Are Targeted by CD8+ T Cells Across MHC Class I Restrictions in Humans and NOD Mice [J].
Azoury, Marie Eliane ;
Tarayrah, Mahmoud ;
Afonso, Georgia ;
Pais, Aurore ;
Colli, Maikel L. ;
Maillard, Claire ;
Lavaud, Cassandra ;
Alexandre-Heymann, Laure ;
Gonzalez-Duque, Sergio ;
Verdier, Yann ;
Vinh, Joelle ;
Pinto, Sheena ;
Buus, Soren ;
Dubois-Laforgue, Daniele ;
Larger, Etienne ;
Beressi, Jean-Paul ;
Bruno, Graziella ;
Eizirik, Decio L. ;
You, Sylvaine ;
Mallone, Roberto .
DIABETES, 2020, 69 (12) :2678-2690
[6]   Benchmarking of T cell receptor repertoire profiling methods reveals large systematic biases [J].
Barennes, Pierre ;
Quiniou, Valentin ;
Shugay, Mikhail ;
Egorov, Evgeniy S. ;
Davydov, Alexey N. ;
Chudakov, Dmitriy M. ;
Uddin, Imran ;
Ismail, Mazlina ;
Oakes, Theres ;
Chain, Benny ;
Eugster, Anne ;
Kashofer, Karl ;
Rainer, Peter P. ;
Darko, Samuel ;
Ransier, Amy ;
Douek, Daniel C. ;
Klatzmann, David ;
Mariotti-Ferrandiz, Encarnita .
NATURE BIOTECHNOLOGY, 2021, 39 (02) :236-245
[7]   Adaptive immunity in HBV infection [J].
Bertoletti, Antonio ;
Ferrari, Carlo .
JOURNAL OF HEPATOLOGY, 2016, 64 :S71-S83
[8]   Deconstructing the Peptide-MHC Specificity of T Cell Recognition [J].
Birnbaum, Michael E. ;
Mendoza, Juan L. ;
Sethi, Dhruv K. ;
Dong, Shen ;
Glanville, Jacob ;
Dobbins, Jessica ;
Oezkan, Engin ;
Davis, Mark M. ;
Wucherpfennig, Kai W. ;
Garcia, K. Christopher .
CELL, 2014, 157 (05) :1073-1087
[9]   MiXCR: software for comprehensive adaptive immunity profiling [J].
Bolotin, Dmitriy A. ;
Poslavsky, Stanislav ;
Mitrophanov, Igor ;
Shugay, Mikhail ;
Mamedov, Ilgar Z. ;
Putintseva, Ekaterina V. ;
Chudakov, Dmitriy M. .
NATURE METHODS, 2015, 12 (05) :380-381
[10]   Diversity, functionality, and stability of the T cell repertoire derived in vivo from a single human T cell precursor [J].
Bousso, P ;
Wahn, V ;
Douagi, I ;
Horneff, G ;
Pannetier, C ;
Le Deist, F ;
Zepp, F ;
Niehues, T ;
Kourilsky, P ;
Fischer, A ;
de Saint Basile, G .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2000, 97 (01) :274-278