Opacimonas viscosa gen. nov., sp. nov., a novel bacterium isolated from phycosphere

被引:0
作者
Lin, Xuanru [1 ,2 ]
Cai, Runlin [1 ,2 ,3 ]
Cai, Guanjing [1 ,2 ,3 ]
Xie, Jianmin [1 ,2 ]
Zhou, Zhenyuan [1 ,2 ]
Wang, Hui [1 ,2 ,3 ]
机构
[1] Shantou Univ, Coll Sci, Biol Dept, Shantou 515063, Peoples R China
[2] Shantou Univ, Inst Marine Sci, Coll Sci, Shantou 515063, Peoples R China
[3] Shantou Univ, Guangdong Prov Key Lab Marine Biotechnol, Shantou 515063, Peoples R China
基金
中国国家自然科学基金;
关键词
Opacimonas; phycosphere; polyphasic analysis; genome reduction; DYELLA; DNA; ALGORITHM; SEQUENCES; DATABASE; SURFACE;
D O I
10.1099/ijsem.0.005904
中图分类号
Q93 [微生物学];
学科分类号
071005 ; 100705 ;
摘要
A novel strain of a member of the family Alteromonadaceae was isolated from the phycosphere of a diatom and designated as LMIT007T. LMIT007T could form milk- white, opaque, circular and smooth colonies on 2216E marine agar. LMIT007T cells were around 1.0-1.8 mu m long, 0.8-1.8 mu m wide, round or oval shaped and had polar flagella but were non- motile. Optimum conditions for growth were 25 degrees C, pH 7.0 and 6 % (w/v) NaCl. The results of 16S rRNA gene- based analysis indicated that LMIT007T had the highest similarity with the type strains Aestuaribacter halophilus JC2043T (95.95 %), Alteromonas lipolytica JW12T (95.60 %) and Alteromonas halophila KCTC 22164T (94.21 %). Furthermore, the results of phylogenetic analysis based on 16S rRNA gene sequences and of phylogenomic analysis indicated that LMIT007T could be clustered into the family Alteromonadaceae but formed a separate branch. The genome size of the strain was 2.95 Mbp and the DNA G+C content was 41.6 %. The average nucleotide identity (ANI) values of orthologous genes between LMIT007T and species of other closely related genera within the family Alteromonadaceae ranged from 66.9 to 69.2 %, and the average amino acid identity (AAI) values ranged from 60.0 to 65.7 %. The main respiratory quinone was ubiquinone- 8. The major fatty acids were summed feature 3 (C16:1 omega 7c / C16:1 omega 6c) and C16:0. The polar lipid profile contain phosphatidylethanolamine, phosphatidylglycerol, aminolipid, two phospholipid and an unknown polar lipid. On the basis of the results of the polyphasic analysis, strain LMIT007T is suggested to represent a novel genus and species within the family Alteromonadaceae, for which the name Opacimonas viscosa gen. nov., sp. nov. is proposed. The type strain is LMIT007T (=MCCC 1K08161T=KCTC 92597T).
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页数:9
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共 38 条
  • [1] Dyella koreensis sp nov., a β-glucosidase-producing bacterium
    An, DS
    Im, WT
    Yang, HC
    Yang, DC
    Lee, ST
    [J]. INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 2005, 55 : 1625 - 1628
  • [2] Dyella thiooxydans sp. nov., a facultatively chemolithotrophic, thiosulfate-oxidizing bacterium isolated from rhizosphere soil of sunflower (Helianthus annuus L.)
    Anandham, Rangasamy
    Kwon, Soon-Wo
    Gandhi, Pandiyan Indira
    Kim, Soo-Jin
    Weon, Hang-Yeon
    Kim, Yi-Seul
    Sa, Tong-Min
    Kim, Yong-Ki
    Jee, Hyeong-Jin
    [J]. INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 2011, 61 : 392 - 398
  • [3] The RAST server: Rapid annotations using subsystems technology
    Aziz, Ramy K.
    Bartels, Daniela
    Best, Aaron A.
    DeJongh, Matthew
    Disz, Terrence
    Edwards, Robert A.
    Formsma, Kevin
    Gerdes, Svetlana
    Glass, Elizabeth M.
    Kubal, Michael
    Meyer, Folker
    Olsen, Gary J.
    Olson, Robert
    Osterman, Andrei L.
    Overbeek, Ross A.
    McNeil, Leslie K.
    Paarmann, Daniel
    Paczian, Tobias
    Parrello, Bruce
    Pusch, Gordon D.
    Reich, Claudia
    Stevens, Rick
    Vassieva, Olga
    Vonstein, Veronika
    Wilke, Andreas
    Zagnitko, Olga
    [J]. BMC GENOMICS, 2008, 9 (1)
  • [4] SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing
    Bankevich, Anton
    Nurk, Sergey
    Antipov, Dmitry
    Gurevich, Alexey A.
    Dvorkin, Mikhail
    Kulikov, Alexander S.
    Lesin, Valery M.
    Nikolenko, Sergey I.
    Son Pham
    Prjibelski, Andrey D.
    Pyshkin, Alexey V.
    Sirotkin, Alexander V.
    Vyahhi, Nikolay
    Tesler, Glenn
    Alekseyev, Max A.
    Pevzner, Pavel A.
    [J]. JOURNAL OF COMPUTATIONAL BIOLOGY, 2012, 19 (05) : 455 - 477
  • [5] NON-STAINING (KOH) METHOD FOR DETERMINATION OF GRAM REACTIONS OF MARINE-BACTERIA
    BUCK, JD
    [J]. APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 1982, 44 (04) : 992 - 993
  • [6] Dyella agri sp nov., isolated from reclaimed grassland soil
    Chaudhary, Dhiraj Kumar
    Kim, Jaisoo
    [J]. INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 2017, 67 (10) : 4246 - 4252
  • [7] Chen MH, 2017, INT J SYST EVOL MICR, V67, P736, DOI [10.1099/ijsem.0.001716, 10.1099/ijsem.0.001946]
  • [8] Collins MD, 1994, CHEM METHODS PROKARY, P345
  • [9] Desiderato JG, 2018, GENET MOL BIOL, V41, P507, DOI [10.1590/1678-4685-GMB-2017-0155, 10.1590/1678-4685-gmb-2017-0155]
  • [10] EVOLUTIONARY TREES FROM DNA-SEQUENCES - A MAXIMUM-LIKELIHOOD APPROACH
    FELSENSTEIN, J
    [J]. JOURNAL OF MOLECULAR EVOLUTION, 1981, 17 (06) : 368 - 376