Lung CT harmonization of paired reconstruction kernel images using generative adversarial networks

被引:2
作者
Krishnan, Aravind R. [1 ,9 ]
Xu, Kaiwen [2 ]
Li, Thomas Z. [3 ]
Remedios, Lucas W. [2 ]
Sandler, Kim L. [4 ]
Maldonado, Fabien [5 ,6 ]
Landman, Bennett A. [1 ,2 ,3 ,7 ,8 ]
机构
[1] Vanderbilt Univ, Dept Elect & Comp Engn, Nashville, TN USA
[2] Vanderbilt Univ, Dept Comp Sci, Nashville, TN USA
[3] Vanderbilt Univ, Dept Biomed Engn, Nashville, TN USA
[4] Vanderbilt Univ, Med Ctr, Dept Radiol, Nashville, TN USA
[5] Vanderbilt Univ, Med Ctr, Dept Med, Nashville, TN USA
[6] Vanderbilt Univ, Med Ctr, Dept Thorac Surg, Nashville, TN USA
[7] Vanderbilt Univ, Med Ctr, Dept Radiol & Radiol Sci, Nashville, TN USA
[8] Vanderbilt Univ, Med Ctr, Inst Imaging Sci, Nashville, TN USA
[9] Vanderbilt Univ, Dept Elect & Comp Engn, Nashville, TN 37235 USA
基金
美国国家科学基金会;
关键词
CT kernel harmonization; deep learning; generative adversarial networks; lung cancer; EMPHYSEMA; VALIDATION; CONVERSION;
D O I
10.1002/mp.17028
中图分类号
R8 [特种医学]; R445 [影像诊断学];
学科分类号
1002 ; 100207 ; 1009 ;
摘要
Background: The kernel used in CT image reconstruction is an important factor that determines the texture of the CT image. Consistency of reconstruction kernel choice is important for quantitative CT-based assessment as kernel differences can lead to substantial shifts in measurements unrelated to underlying anatomical structures. Purpose: In this study, we investigate kernel harmonization in a multi-vendor low-dose CT lung cancer screening cohort and evaluate our approach's validity in quantitative CT-based assessments. Methods: Using the National Lung Screening Trial, we identified CT scan pairs of the same sessions with one reconstructed from a soft tissue kernel and one from a hard kernel. In total, 1000 pairs of five different paired kernel types (200 each) were identified. We adopt the pix2pix architecture to train models for kernel conversion. Each model was trained on 100 pairs and evaluated on 100 withheld pairs. A total of 10 models were implemented. We evaluated the efficacy of kernel conversion based on image similarity metrics including root mean squared error (RMSE), peak signal-to-noise ratio (PSNR), and structural similarity index measure (SSIM) as well as the capability of the models to reduce measurement shifts in quantitative emphysema and body composition measurements. Additionally, we study the reproducibility of standard radiomic features for all kernel pairs before and after harmonization. Results: Our approach effectively converts CT images from one kernel to another in all paired kernel types, as indicated by the reduction in RMSE (p < 0.05) and an increase in the PSNR (p < 0.05) and SSIM (p < 0.05) for both directions of conversion for all pair types. In addition, there is an increase in the agreement for percent emphysema, skeletal muscle area, and subcutaneous adipose tissue (SAT) area for both directions of conversion. Furthermore, radiomic features were reproducible when compared with the ground truth features. Conclusions: Kernel conversion using deep learning reduces measurement variation in percent emphysema, muscle area, and SAT area.
引用
收藏
页码:5510 / 5523
页数:14
相关论文
共 35 条
  • [1] Reduced Lung-Cancer Mortality with Low-Dose Computed Tomographic Screening
    Aberle, Denise R.
    Adams, Amanda M.
    Berg, Christine D.
    Black, William C.
    Clapp, Jonathan D.
    Fagerstrom, Richard M.
    Gareen, Ilana F.
    Gatsonis, Constantine
    Marcus, Pamela M.
    Sicks, JoRean D.
    [J]. NEW ENGLAND JOURNAL OF MEDICINE, 2011, 365 (05) : 395 - 409
  • [2] Quantitative validation of the severity of emphysema by multi-detector CT
    Atta, Haisam
    Seifeldein, Gehan S.
    Rashad, Alaa
    Elmorshidy, Riham
    [J]. EGYPTIAN JOURNAL OF RADIOLOGY AND NUCLEAR MEDICINE, 2015, 46 (02) : 355 - 361
  • [3] Emphysema quantification using low-dose computed tomography with deep learning-based kernel conversion comparison
    Bak, So Hyeon
    Kim, Jong Hyo
    Jin, Hyeongmin
    Kwon, Sung Ok
    Kim, Bom
    Cha, Yoon Ki
    Kim, Woo Jin
    [J]. EUROPEAN RADIOLOGY, 2020, 30 (12) : 6779 - 6787
  • [4] STATISTICAL METHODS FOR ASSESSING AGREEMENT BETWEEN TWO METHODS OF CLINICAL MEASUREMENT
    BLAND, JM
    ALTMAN, DG
    [J]. LANCET, 1986, 1 (8476) : 307 - 310
  • [5] Emphysema: Effect of reconstruction algorithm on CT imaging measures
    Boedeker, KL
    McNitt-Gray, MF
    Rogers, SR
    Truong, DA
    Brown, MS
    Gjertson, DW
    Goldin, JG
    [J]. RADIOLOGY, 2004, 232 (01) : 295 - 301
  • [6] Description and implementation of a quality control program in an imaging-based clinical trial
    Cagnon, Christopher H.
    Cody, Dianna D.
    McNitt-Gray, Michael F.
    Seibert, J. Anthony
    Judy, Philip F.
    Aberle, Denise R.
    [J]. ACADEMIC RADIOLOGY, 2006, 13 (11) : 1431 - 1441
  • [7] Deep Learning-based Image Conversion of CT Reconstruction Kernels Improves Radiomics Reproducibility for Pulmonary Nodules or Masses
    Choe, Jooae
    Lee, Sang Min
    Do, Kyung-Hymn
    Lee, Gaeun
    Lee, June-Goo
    Seo, Joon Beom
    [J]. RADIOLOGY, 2019, 292 (02) : 365 - 373
  • [8] Deep learning-based harmonization of CT reconstruction kernels towards improved clinical task performance
    Du, Dongyang
    Lv, Wenbing
    Lv, Jieqin
    Chen, Xiaohui
    Wu, Hubing
    Rahmim, Arman
    Lu, Lijun
    [J]. EUROPEAN RADIOLOGY, 2023, 33 (04) : 2426 - 2438
  • [9] CT kernel conversions using convolutional neural net for super-resolution with simplified squeeze-and-excitation blocks and progressive learning among smooth and sharp kernels
    Eun, Da-in
    Woo, Ilsang
    Park, Beomhee
    Kim, Namkug
    Lee, Sang Min A.
    Seo, Joon Beom
    [J]. COMPUTER METHODS AND PROGRAMS IN BIOMEDICINE, 2020, 196
  • [10] Normalizing computed tomography data reconstructed with different filter kernels: effect on emphysema quantification
    Gallardo-Estrella, Leticia
    Lynch, David A.
    Prokop, Mathias
    Stinson, Douglas
    Zach, Jordan
    Judy, Philip F.
    van Ginneken, Bram
    van Rikxoort, Eva M.
    [J]. EUROPEAN RADIOLOGY, 2016, 26 (02) : 478 - 486