Identification of the shared gene signature and biological mechanism between type 2 diabetes and colorectal cancer

被引:7
作者
Liu, Xianqiang [1 ,2 ]
Li, Dingchang [1 ,2 ]
Gao, Wenxing [1 ,2 ]
Zhao, Wen [2 ,3 ]
Jin, Lujia [1 ,2 ]
Chen, Peng [1 ,2 ]
Liu, Hao [2 ,3 ]
Zhao, Yingjie [1 ,2 ]
Dong, Guanglong [2 ]
机构
[1] Med Sch Chinese PLA, Beijing, Peoples R China
[2] Chinese Peoples Liberat Army Gen Hosp, Med Ctr 1, Dept Gen Surg, Beijing, Peoples R China
[3] Nankai Univ, Sch Med, Tianjin, Peoples R China
关键词
colorectal cancer; weighted gene co-expression network analysis; type; 2; diabetes; bioinformatics analysis; hub gene signature; IMMUNE CELLS; MELLITUS; MORTALITY; SURVIVAL; IMPACT; RISK; POLARIZATION; GLUCOSE; COHORT; MEN;
D O I
10.3389/fgene.2023.1202849
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
Background: The correlation of type 2 diabetes mellitus (T2DM) with colorectal cancer (CRC) has garnered considerable attention in the scientific community. Despite this, the molecular mechanisms underlying the interaction between these two diseases are yet to be elucidated. Hence, the present investigation aims to explore the shared gene signatures, immune profiles, and drug sensitivity patterns that exist between CRC and T2DM.Methods: RNA sequences and characteristics of patients with CRC and T2DM were retrieved from The Cancer Genome Atlas and Gene Expression Omnibus databases. These were investigated using weighted gene co-expression network analysis (WGCNA) to determine the co-expression networks linked to the conditions. Genes shared between CRC and T2DM were analyzed by univariate regression, followed by risk prognosis assessment using the LASSO regression model. Various parameters were assessed through different software such as the ESTIMATE, CIBERSORT, AND SSGSEA utilized for tumor immune infiltration assessment in the high- and low-risk groups. Additionally, pRRophetic was utilized to assess the sensitivity to chemotherapeutic agents in both groups. This was followed by diagnostic modeling using logistic modeling and clinical prediction modeling using the nomogram.Results: WGCNA recognized four and five modules that displayed a high correlation with T2DM and CRC, respectively. In total, 868 genes were shared between CRC and T2DM, with 14 key shared genes being identified in the follow-up analysis. The overall survival (OS) of patients in the low-risk group was better than that of patients in the high-risk group. In contrast, the high-risk group exhibited higher expression levels of immune checkpoints The Cox regression analyses established that the risk-score model possessed independent prognostic value in predicting OS. To facilitate the prediction of OS and cause-specific survival, the nomogram was established utilizing the Cox regression model.Conclusion: The T2DM + CRC risk-score model enabled independent prediction of OS in individuals with CRC. Moreover, these findings revealed novel genes that hold promise as therapeutic targets or biomarkers in clinical settings.
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页数:16
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共 64 条
[1]   The metabolic syndrome and risk of incident colorectal cancer [J].
Ahmed, Rehana L. ;
Schmitz, Kathryn H. ;
Anderson, Kristin E. ;
Rosamond, Wayne D. ;
Folsom, Aaron R. .
CANCER, 2006, 107 (01) :28-36
[2]   Activation of NKT Cells in an Anti-PD-1-Resistant Tumor Model Enhances Antitumor Immunity by Reinvigorating Exhausted CD8 T Cells [J].
Bae, Eun-Ah ;
Seo, Hyungseok ;
Kim, Byung-Seok ;
Choi, Jeongwon ;
Jeon, Insu ;
Shin, Kwang-Soo ;
Koh, Choong-Hyun ;
Song, Boyeong ;
Kim, Il-Kyu ;
Min, Byung Soh ;
Han, Yoon Dae ;
Shin, Sang Joon ;
Kang, Chang-Yuil .
CANCER RESEARCH, 2018, 78 (18) :5315-5326
[3]   Long-term All-Cause Mortality in Cancer Patients With Preexisting Diabetes Mellitus A Systematic Review and Meta-analysis [J].
Barone, Bethany B. ;
Yeh, Hsin-Chieh ;
Snyder, Claire F. ;
Peairs, Kimberly S. ;
Stein, Kelly B. ;
Derr, Rachel L. ;
Wolff, Antonio C. ;
Brancati, Frederick L. .
JAMA-JOURNAL OF THE AMERICAN MEDICAL ASSOCIATION, 2008, 300 (23) :2754-2764
[4]   Spatiotemporal Dynamics of Intratumoral Immune Cells Reveal the Immune Landscape in Human Cancer [J].
Bindea, Gabriela ;
Mlecnik, Bernhard ;
Tosolini, Marie ;
Kirilovsky, Amos ;
Waldner, Maximilian ;
Obenauf, Anna C. ;
Angell, Helen ;
Fredriksen, Tessa ;
Lafontaine, Lucie ;
Berger, Anne ;
Bruneval, Patrick ;
Fridman, Wolf Herman ;
Becker, Christoph ;
Pages, Franck ;
Speicher, Michael R. ;
Trajanoski, Zlatko ;
Galon, Jerome .
IMMUNITY, 2013, 39 (04) :782-795
[5]   NK Cells Stimulate Recruitment of cDC1 into the Tumor Microenvironment Promoting Cancer Immune Control [J].
Boettcher, Jan P. ;
Bonavita, Eduardo ;
Chakravarty, Probir ;
Blees, Hanna ;
Cabeza-Cabrerizo, Mar ;
Sammicheli, Stefano ;
Rogers, Neil C. ;
Sahai, Erik ;
Zelenay, Santiago ;
Reis e Sousa, Caetano .
CELL, 2018, 172 (05) :1022-+
[6]  
Bray F, 2018, CA-CANCER J CLIN, V68, P394, DOI [10.3322/caac.21492, 10.3322/caac.21609]
[7]   Overweight, obesity, and mortality from cancer in a prospectively studied cohort of US adults [J].
Calle, EE ;
Rodriguez, C ;
Walker-Thurmond, K ;
Thun, MJ .
NEW ENGLAND JOURNAL OF MEDICINE, 2003, 348 (17) :1625-1638
[8]   70-Gene Signature as an Aid to Treatment Decisions in Early-Stage Breast Cancer [J].
Cardoso, F. ;
van't Veer, L. J. ;
Bogaerts, J. ;
Slaets, L. ;
Viale, G. ;
Delaloge, S. ;
Pierga, J. -Y. ;
Brain, E. ;
Causeret, S. ;
DeLorenzi, M. ;
Glas, A. M. ;
Golfinopoulos, V. ;
Goulioti, T. ;
Knox, S. ;
Matos, E. ;
Meulemans, B. ;
Neijenhuis, P. A. ;
Nitz, U. ;
Passalacqua, R. ;
Ravdin, P. ;
Rubio, I. T. ;
Saghatchian, M. ;
Smilde, T. J. ;
Sotiriou, C. ;
Stork, L. ;
Straehle, C. ;
Thomas, G. ;
Thompson, A. M. ;
van der Hoeven, J. M. ;
Vuylsteke, P. ;
Bernards, R. ;
Tryfonidis, K. ;
Rutgers, E. ;
Piccart, M. .
NEW ENGLAND JOURNAL OF MEDICINE, 2016, 375 (08) :717-729
[9]   Exploration of cross-talk and pyroptosis-related gene signatures and molecular mechanisms between periodontitis and diabetes mellitus via peripheral blood mononuclear cell microarray data analysis [J].
Chen, Hang ;
Peng, Limin ;
Wang, Zhenxiang ;
He, Yujuan ;
Tang, Song ;
Zhang, Xiaonan .
CYTOKINE, 2022, 159
[10]   Tumor-recruited M2 macrophages promote gastric and breast cancer metastasis via M2 macrophage-secreted CHI3L1 protein [J].
Chen, Yulei ;
Zhang, Siyuan ;
Wang, Qizhi ;
Zhang, Xiaobo .
JOURNAL OF HEMATOLOGY & ONCOLOGY, 2017, 10 :1-13