Flavihumibacter fluminis sp. nov., a novel thermotolerant bacterium isolated from river silt

被引:2
作者
Guo, Bai [1 ]
Mu, Weidong [1 ]
Mao, Sidi [1 ]
Li, Shucheng [1 ]
Yang, Shaomei [1 ]
Liu, Aijv [2 ]
Wei, Shuzhen [3 ,4 ,5 ]
Li, Xiuyun [6 ]
Sang, Feng [1 ]
Deng, Hongkuan [1 ]
Dong, Yuling [1 ]
Liu, Hongliang [1 ,4 ]
Chen, Zhiwei [7 ]
机构
[1] Shandong Univ Technol, Sch Life Sci & Med, Zibo 255000, Shandong, Peoples R China
[2] Shandong Univ Technol, Sch Resources & Environm Engn, Zibo 255000, Shandong, Peoples R China
[3] Hengshui Univ, Ctr Wetland Conservat & Res, Hengshui 053000, Hebei, Peoples R China
[4] Collaborat Innovat Ctr Wetland Conservat & Green D, Hengshui 053000, Hebei, Peoples R China
[5] Hebei Key Lab Wetland Ecol & Conservat, Hengshui 053000, Hebei, Peoples R China
[6] Shandong Prov Maternal & Child Hlth Care Hosp, Jinan 250014, Shandong, Peoples R China
[7] Shandong Univ Technol, Inst Food & Nutr Sci, Zibo 255000, Shandong, Peoples R China
基金
中国国家自然科学基金;
关键词
Flavihumibacter fluminis sp; nov; genome; phylogenomic tree; thermotolerance; Venn diagram; ANNOTATION; SEQUENCES; DATABASE; QUALITY; DNA;
D O I
10.1099/ijsem.0.005619
中图分类号
Q93 [微生物学];
学科分类号
071005 ; 100705 ;
摘要
A yellow, Gram- stain-positive, strictly aerobic, thermotolerant, non-motile and rod-shaped bacterial strain, designated RY-1T, was isolated from a silt sample of Fuyang River, Wuqiang County, Hengshui City, Hebei Province, PR China. Cells showed oxidase-and catalase-positive activities. Growth occurred at 20-45 degrees C (optimum, 37 degrees C) and pH 6.0-8.0 (optimum, pH 7.0), and in the presence of 0-1.5 % (w/v) NaCl (optimum, 0%). A phylogenetic tree based on 16S rRNA gene sequences revealed that strain RY-1T formed a phylogenetic lineage with Flavihumibacter members within the family Chitinophagaceae. A comparison of 16S rRNA gene sequences showed that strain RY- 1T was most closely related to Flavihumibacter cheonanensis WS16T (98.6 %), Flavihumibacter sediminis CJ663T (97.7 %) and Flavihumibacter solisilvae 3-3T (97.6 %). The genome size of strain RY- 1T was 4.71 Mb, and the DNA G+C content was 44.3 %. The average nucleotide identity, digital DNA-DNA hybridization and average amino acid identity values between strain RY- 1T and reference strains were all lower than the threshold values for species delineation. Strain RY-1T contained menaquinone- 7 and iso-C15:0, iso-C17: 0 3 -OH and iso-C15:1G as the sole respiratory isoprenoid quinone and major cellular fatty acids (>= 5 %), respectively. The major polar lipids consisted of phosphatidylethanolamine, three unidentified aminolipids and four unidentified lipids. According to the results of phenotypic, phylogenetic and chemotaxonomic characteris-tics, strain RY- 1T represents a novel species of the genus Flavihumibacter, for which the name Flavihumibacter fluminis sp. nov. is proposed. The type strain is RY- 1T (=GDMCC 1.2775T=JCM 34870T).
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页数:8
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