Enhanced sampling for lipid-protein interactions during membrane dynamics

被引:1
|
作者
Masone, Diego [1 ,2 ]
机构
[1] Univ Nacl Cuyo UNCuyo, Consejo Nacl Invest Cient &Tecn CONICET, Inst Histol & Embriol Mendoza IHEM, Tecn CONICET, RA-5500 Mendoza, Argentina
[2] Univ Nacl Cuyo UNCuyo, Fac Ingn, RA-5500 Mendoza, Argentina
关键词
Membrane bending; Membrane fusion; Fusion stalk; Hemifusion diaphragm; Fusion pore; Molecular dynamics; Collective variables; Collective behavior; Emergent properties; FREE-ENERGY LANDSCAPE; FLUID-MOSAIC MODEL; MOLECULAR-DYNAMICS; ALPHA-SYNUCLEIN; FUSION PORE; COLLECTIVE VARIABLES; REACTION COORDINATE; VESICLE FUSION; FORCE-FIELD; MARTINI;
D O I
10.32604/biocell.2023.024146
中图分类号
Q [生物科学];
学科分类号
07 ; 0710 ; 09 ;
摘要
The inflexible concept of membrane curvature as an independent property of lipid structures is today obsolete. Lipid bilayers behave as many-body entities with emergent properties that depend on their interactions with the environment. In particular, proteins exert crucial actions on lipid molecules that ultimately condition the collective properties of the membranes. In this review, the potential of enhanced molecular dynamics to address cell-biology problems is discussed. The cases of membrane deformation, membrane fusion, and the fusion pore are analyzed from the perspective of the dimensionality reduction by collective variables. Coupled lipid-protein interactions as fundamental determinants of large membrane remodeling events are also commented. Finally, novel strategies merging cell biology and physics are considered as future lines of research.
引用
收藏
页码:1 / 14
页数:14
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