Machine learning-based integration identifies the ferroptosis hub genes in nonalcoholic steatohepatitis

被引:8
作者
Dai, Longfei [1 ]
Yuan, Wenkang [1 ]
Jiang, Renao [1 ]
Zhan, Zhicheng [1 ]
Zhang, Liangliang [1 ]
Xu, Xinjian [1 ]
Qian, Yuyang [1 ]
Yang, Wenqi [1 ]
Zhang, Zhen [1 ]
机构
[1] Anhui Med Univ, Affiliated Hosp 1, Dept Gen Surg, 218 Jixi Rd, Hefei 230022, Anhui, Peoples R China
关键词
Machine learning; Ferroptosis; NASH; ZFP36; Diagnosis; FATTY LIVER; BINDING;
D O I
10.1186/s12944-023-01988-9
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
BackgroundFerroptosis, is characterized by lipid peroxidation of fatty acids in the presence of iron ions, which leads to cell apoptosis. This leads to the disruption of metabolic pathways, ultimately resulting in liver dysfunction. Although ferroptosis is linked to nonalcoholic steatohepatitis (NASH), understanding the key ferroptosis-related genes (FRGs) involved in NASH remains incomplete. NASH may be targeted therapeutically by identifying the genes responsible for ferroptosis.MethodsTo identify ferroptosis-related genes and develop a ferroptosis-related signature (FeRS), 113 machine-learning algorithm combinations were used.ResultsThe FeRS constructed using the Generalized Linear Model Boosting algorithm and Gradient Boosting Machine algorithms exhibited the best prediction performance for NASH. Eight FRGs, with ZFP36 identified by the algorithms as the most crucial, were incorporated into in FeRS. ZFP36 is significantly enriched in various immune cell types and exhibits significant positive correlations with most immune signatures.ConclusionZFP36 is a key FRG involved in NASH pathogenesis.
引用
收藏
页数:14
相关论文
共 50 条
[1]   Systematic integrative analysis of gene expression identifies HNF4A as the central gene in pathogenesis of non-alcoholic steatohepatitis [J].
Baciu, Cristina ;
Pasini, Elisa ;
Angeli, Marc ;
Schwenger, Katherine ;
Afrin, Jenifar ;
Humar, Atul ;
Fischer, Sandra ;
Patel, Keyur ;
Allard, Johane ;
Bhat, Mamatha .
PLOS ONE, 2017, 12 (12)
[2]   Pathology of non-alcoholic fatty liver disease [J].
Bedossa, Pierre .
LIVER INTERNATIONAL, 2017, 37 :85-89
[3]   Nonalcoholic fatty liver disease [J].
Brunt, Elizabeth M. ;
Wong, Vincent W. -S. ;
Nobili, Valerio ;
Day, Christopher P. ;
Sookoian, Silvia ;
Maher, Jacquelyn J. ;
Bugianesi, Elisabetta ;
Sirlin, Claude B. ;
Neuschwander-Tetri, BrentA. ;
Rinella, Mary E. .
NATURE REVIEWS DISEASE PRIMERS, 2015, 1
[4]   NAFLD: A multisystem disease [J].
Byrne, Christopher D. ;
Targher, Giovanni .
JOURNAL OF HEPATOLOGY, 2015, 62 :S47-S64
[5]   JASPAR 2022: the 9th release of the open-access database of transcription factor binding profiles [J].
Castro-Mondragon, Jaime A. ;
Riudavets-Puig, Rafael ;
Rauluseviciute, Ieva ;
Lemma, Roza Berhanu ;
Turchi, Laura ;
Blanc-Mathieu, Romain ;
Lucas, Jeremy ;
Boddie, Paul ;
Khan, Aziz ;
Perez, Nicolas Manosalva ;
Fornes, Oriol ;
Leung, Tiffany Y. ;
Aguirre, Alejandro ;
Hammal, Fayrouz ;
Schmelter, Daniel ;
Baranasic, Damir ;
Ballester, Benoit ;
Sandelin, Albin ;
Lenhard, Boris ;
Vandepoele, Klaas ;
Wasserman, Wyeth W. ;
Parcy, Francois ;
Mathelier, Anthony .
NUCLEIC ACIDS RESEARCH, 2022, 50 (D1) :D165-D173
[6]   Depression and risk of gastrointestinal disorders: a comprehensive two-sample Mendelian randomization study of European ancestry [J].
Chen, Dongze ;
Zhang, Yali ;
Huang, Tao ;
Jia, Jinzhu .
PSYCHOLOGICAL MEDICINE, 2023, 53 (15) :7309-7321
[7]   The multifaceted role of ferroptosis in liver disease [J].
Chen, Junyi ;
Li, Xiaopeng ;
Ge, Chaodong ;
Min, Junxia ;
Wang, Fudi .
CELL DEATH AND DIFFERENTIATION, 2022, 29 (03) :467-480
[8]   Machine Learning in Medicine [J].
Deo, Rahul C. .
CIRCULATION, 2015, 132 (20) :1920-1930
[9]   Immune cell infiltration and the genes associated with ligamentum flavum hypertrophy: Identification and validation [J].
Duan, Yang ;
Ni, Songjia ;
Zhao, Kai ;
Qian, Jing ;
Hu, Xinyue .
FRONTIERS IN CELL AND DEVELOPMENTAL BIOLOGY, 2022, 10
[10]   Regulation of mRNA Translation and Stability by microRNAs [J].
Fabian, Marc Robert ;
Sonenberg, Nahum ;
Filipowicz, Witold .
ANNUAL REVIEW OF BIOCHEMISTRY, VOL 79, 2010, 79 :351-379