Proteomic insights into Helcococcus kunzii in a diabetic foot ulcer-like environment

被引:3
作者
Durand, Benjamin A. R. N. [1 ]
Dunyach-Remy, Catherine [1 ]
El Kaddouri, Oumayma [2 ]
Daher, Riham [1 ]
Lavigne, Jean-Philippe [1 ]
Armengaud, Jean [2 ]
Grenga, Lucia [2 ,3 ]
机构
[1] Univ Montpellier, Univ Hosp Nimes, Dept Microbiol & Hosp Hyg, Bacterial Virulence & Chron Infect,INSERM U1047, Nimes, France
[2] Univ Paris Saclay, Dept Medicaments & Technol Sante DMTS, CEA, INRAE,SPI, Bagnols Sur Ceze, France
[3] Univ Paris Saclay, Dept Medicaments & Technol St e DMTS, CEA, INRAE,SPI, F-30200 Bagnols Sur Ceze, France
关键词
exoproteome; infected wounds; mass spectrometry; opportunistic bacterium; proteome; virulence; STAPHYLOCOCCUS-AUREUS; PROTEIN;
D O I
10.1002/prca.202200069
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
PurposeHelcococcus kunzii is a skin commensal, Gram-positive bacterium, mostly isolated from infected chronic wounds. This opportunistic pathogen is usually co-isolated with Staphylococcus aureus. The present dataset explores the production and secretion of H. kunzii bacterial virulence interacting proteins in a growth medium mimicking chronic wounds in exponential and stationary growth phases. Experimental DesignThe H. kunzii cellular proteome and exoproteome were assessed by analyzing three biological replicates per condition tested. Samples were analyzed using a Q-Exactive HF mass spectrometer. Comparative and functional analyses were performed to profile the identified protein set. ResultsThe H. kunzii's cellular proteome encompassed 969 proteins, among which 64 and 53 were specifically identified in the exponential and stationary phase of growth, respectively. Its exoproteome comprised 58 proteins, among which 16 and 14 were characteristic of each growth stage. Metabolic differences between the two phases of growth are discussed. Besides, the production of previously shortlisted and novel putative H. kunzii targets involved in modulating the virulence of S. aureus is investigated. Conclusion and Clinical RelevanceThis work, pioneering the study of H. kunzii physiology in a chronic wound-like environment, should assist future research on this opportunistic pathogen and the search for innovative approaches for wound management.
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页数:6
相关论文
共 22 条
[1]   The G5 domain: a potential N-acetylglucosamine recognition domain involved in biofilm formation [J].
Bateman, A ;
Holden, MTG ;
Yeats, C .
BIOINFORMATICS, 2005, 21 (08) :1301-1303
[2]   Breast abscess associated with Helcococcus kunzii [J].
Chagla, AH ;
Borczyk, AA ;
Facklam, RR ;
Lovgren, M .
JOURNAL OF CLINICAL MICROBIOLOGY, 1998, 36 (08) :2377-2379
[3]   Virulence regulation and quorum sensing in staphylococcal infections: Competitive AgrC antagonists as quorum sensing inhibitors [J].
Chan, WC ;
Coyle, BJ ;
Williams, P .
JOURNAL OF MEDICINAL CHEMISTRY, 2004, 47 (19) :4633-4641
[4]   PHYLOGENETIC ANALYSIS OF SOME AEROCOCCUS-LIKE ORGANISMS FROM CLINICAL SOURCES - DESCRIPTION OF HELCOCOCCUS-KUNZII GEN-NOV, SP-NOV [J].
COLLINS, MD ;
FACKLAM, RR ;
RODRIGUES, UM ;
RUOFF, KL .
INTERNATIONAL JOURNAL OF SYSTEMATIC BACTERIOLOGY, 1993, 43 (03) :425-429
[5]   Comparative genomics analysis of two Helcococcus kunzii strains co-isolated with Staphylococcus aureus from diabetic foot ulcers [J].
Durand, Benjamin A. R. N. ;
Martinez, Alex Yahiaoui ;
Baud, Damien ;
Francois, Patrice ;
Lavigne, Jean-Philippe ;
Dunyach-Remy, Catherine .
GENOMICS, 2022, 114 (03)
[6]   Decrease of Staphylococcus aureus Virulence by Helcococcus kunzii in a Caenorhabditis elegans Model [J].
Essebe, Christelle Ngba ;
Visvikis, Orane ;
Fines-Guyon, Marguerite ;
Vergne, Anne ;
Cattoir, Vincent ;
Lecoustumier, Alain ;
Lemichez, Emmanuel ;
Sotto, Albert ;
Lavigne, Jean-Philippe ;
Dunyach-Remy, Catherine .
FRONTIERS IN CELLULAR AND INFECTION MICROBIOLOGY, 2017, 7
[7]   FeGenie: A Comprehensive Tool for the Identification of Iron Genes and Iron Gene Neighborhoods in Genome and Metagenome Assemblies [J].
Garber, Arkadiy I. ;
Nealson, Kenneth H. ;
Okamoto, Akihiro ;
McAllister, Sean M. ;
Chan, Clara S. ;
Barco, Roman A. ;
Merino, Nancy .
FRONTIERS IN MICROBIOLOGY, 2020, 11
[8]  
Hartmann EM, 2014, METHODS MOL BIOL, V1197, P275, DOI 10.1007/978-1-4939-1261-2_16
[9]   Evaluation of Sample Preparation Methods for Fast Proteotyping of Microorganisms by Tandem Mass Spectrometry [J].
Hayoun, Karim ;
Gouveia, Duarte ;
Grenga, Lucia ;
Pible, Olivier ;
Armengaud, Jean ;
Alpha-Bazin, Beatrice .
FRONTIERS IN MICROBIOLOGY, 2019, 10
[10]   BlastKOALA and GhostKOALA: KEGG Tools for Functional Characterization of Genome and Metagenome Sequences [J].
Kanehisa, Minoru ;
Sato, Yoko ;
Morishima, Kanae .
JOURNAL OF MOLECULAR BIOLOGY, 2016, 428 (04) :726-731