I kappa B kinase interacting protein as a promising biomarker in pan-cancer: A multi-omics analysis

被引:1
作者
Bi, Chenyang [1 ]
Wang, Zhe [1 ]
Xiao, Yafei [1 ]
Zhao, Ying [1 ]
Guo, Runjiang [1 ]
Xiong, Luyao [1 ]
Ji, Zhiyu [1 ]
Li, Yifan [1 ]
Li, Quanying [1 ]
Qin, Changjiang [1 ]
机构
[1] Henan Univ, Huaihe Hosp, Dept Gastrointestinal Surg, Kaifeng, Peoples R China
关键词
IKBIP; pan-cancer; prognostic biomarker; methylation; immunosuppressive microenvironment; DNA METHYLATION; TUMOR; INFILTRATION; IKIP; EMT;
D O I
10.3389/fgene.2023.1138137
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
Background: Human chromosome 12 contains I kappa B kinase interacting protein (IKBIP) is also commonly known as IKIP. The involvement of IKBIP in the growth of tumors has only been discussed in a small number of publications.Purpose: To explore the role that IKBIP plays in the development of a wide variety of neoplasms, as well as the tumor immunological microenvironment.Methods: UALCAN, HPA, Genotype Tissue Expression, Cancer Genome Maps, and other datasets were used to analyze IKBIP expression. We thoroughly investigated the predictive importance of IKBIP in pan-cancer, clinical traits, and genetic anomalies. We studied whether there is a link between IKBIP and immune-related genes, microsatellite instability (MSI), and the incidence of tumor mutational burden (TMB). The link between immune cell infiltration and IKBIP expression was examined using data on immune cell infiltration from ImmuCellAI, TIMER2, and earlier studies. Finally, gene set enrichment analysis (GSEA) was performed to determine the signaling pathways associated with IKBIP.Results: IKBIP is highly expressed in most cancers and is negatively associated with the prognosis of several major cancer types. Furthermore, IKBIP expression was linked to TMB in 13 cancers and MSI in seven cancers. Additionally, IKBIP is associated with numerous immunological and cancer-promoting pathways. Simultaneously, various cancer types have unique tumor-infiltrating immune cell profiles.Conclusion: IKBIP has the potential to act as a pan-cancer oncogene and is crucial for both carcinogenesis and cancer immunity. Elevated IKBIP expression implies an immunosuppressive environment and may be used as a prognostic biomarker and therapeutic target.
引用
收藏
页数:16
相关论文
共 49 条
[1]   SnapShot: Immune Checkpoint Inhibitors [J].
Abril-Rodriguez, Gabriel ;
Ribas, Antoni .
CANCER CELL, 2017, 31 (06)
[2]  
Bailey MH, 2018, CELL, V173, P371, DOI [10.1016/j.cell.2018.02.060, 10.1016/j.cell.2018.07.034]
[3]   Understanding the tumor immune microenvironment (TIME) for effective therapy [J].
Binnewies, Mikhail ;
Roberts, Edward W. ;
Kersten, Kelly ;
Chan, Vincent ;
Fearon, Douglas F. ;
Merad, Miriam ;
Coussens, Lisa M. ;
Gabrilovich, Dmitry I. ;
Ostrand-Rosenberg, Suzanne ;
Hedrick, Catherine C. ;
Vonderheide, Robert H. ;
Pittet, Mikael J. ;
Jain, Rakesh K. ;
Zou, Weiping ;
Howcroft, T. Kevin ;
Woodhouse, Elisa C. ;
Weinberg, Robert A. ;
Krummel, Matthew F. .
NATURE MEDICINE, 2018, 24 (05) :541-550
[4]   Genomic basis for RNA alterations in cancer [J].
Calabrese, Claudia ;
Davidson, Natalie R. ;
Demircioglu, Deniz ;
Fonseca, Nuno A. ;
He, Yao ;
Kahles, Andre ;
Kjong-Van Lehmann ;
Liu, Fenglin ;
Shiraishi, Yuichi ;
Soulette, Cameron M. ;
Urban, Lara ;
Greger, Liliana ;
Li, Siliang ;
Liu, Dongbing ;
Perry, Marc D. ;
Xiang, Qian ;
Zhang, Fan ;
Zhang, Junjun ;
Bailey, Peter ;
Erkek, Serap ;
Hoadley, Katherine A. ;
Hou, Yong ;
Huska, Matthew R. ;
Kilpinen, Helena ;
Korbel, Jan O. ;
Marin, Maximillian G. ;
Markowski, Julia ;
Nandi, Tannistha ;
Pan-Hammarstrom, Qiang ;
Pedamallu, Chandra Sekhar ;
Siebert, Reiner ;
Stark, Stefan G. ;
Su, Hong ;
Tan, Patrick ;
Waszak, Sebastian M. ;
Yung, Christina ;
Zhu, Shida ;
Awadalla, Philip ;
Creighton, Chad J. ;
Meyerson, Matthew ;
Ouellette, B. F. Francis ;
Wu, Kui ;
Yang, Huanming ;
Brazma, Alvis ;
Brooks, Angela N. ;
Goke, Jonathan ;
Raetsch, Gunnar ;
Schwarz, Roland F. ;
Stegle, Oliver ;
Zhang, Zemin .
NATURE, 2020, 578 (7793) :129-+
[5]   The cBio Cancer Genomics Portal: An Open Platform for Exploring Multidimensional Cancer Genomics Data [J].
Cerami, Ethan ;
Gao, Jianjiong ;
Dogrusoz, Ugur ;
Gross, Benjamin E. ;
Sumer, Selcuk Onur ;
Aksoy, Buelent Arman ;
Jacobsen, Anders ;
Byrne, Caitlin J. ;
Heuer, Michael L. ;
Larsson, Erik ;
Antipin, Yevgeniy ;
Reva, Boris ;
Goldberg, Arthur P. ;
Sander, Chris ;
Schultz, Nikolaus .
CANCER DISCOVERY, 2012, 2 (05) :401-404
[6]   Epigenetic drivers of tumourigenesis and cancer metastasis [J].
Chatterjee, Aniruddha ;
Rodger, Euan J. ;
Eccles, Michael R. .
SEMINARS IN CANCER BIOLOGY, 2018, 51 :149-159
[7]   Identification of the potential biomarkers in patients with glioma: a weighted gene co-expression network analysis [J].
Chen, Ting-Yu ;
Liu, Yang ;
Chen, Liang ;
Luo, Jie ;
Zhang, Chao ;
Shen, Xian-Feng .
CARCINOGENESIS, 2020, 41 (06) :743-750
[8]   Pan-tumor genomic biomarkers for PD-1 checkpoint blockade-based immunotherapy [J].
Cristescu, Razvan ;
Mogg, Robin ;
Ayers, Mark ;
Albright, Andrew ;
Murphy, Erin ;
Yearley, Jennifer ;
Sher, Xinwei ;
Liu, Xiao Qiao ;
Lu, Hongchao ;
Nebozhyn, Michael ;
Zhang, Chunsheng ;
Lunceford, Jared ;
Joe, Andrew ;
Cheng, Jonathan ;
Webber, Andrea L. ;
Ibrahim, Nageatte ;
Plimack, Elizabeth R. ;
Ott, Patrick A. ;
Seiwert, Tanguy ;
Ribas, Antoni ;
McClanahan, Terrill K. ;
Tomassini, Joanne E. ;
Loboda, Andrey ;
Kaufman, David .
SCIENCE, 2018, 362 (6411) :197-+
[9]   Chemokines and the extracellular matrix: Set of targets for tumor development and treatment [J].
da Silva, Paulo Henrique Rosa ;
Borges, Bruna Cristina ;
Uehara, Isadora Akemi ;
Soldi, Luiz Ricardo ;
de Araujo, Rogerio Agenor ;
Silva, Marcelo Jose Barbosa .
CYTOKINE, 2021, 144
[10]   PD-L1 Expression is Highly Associated with Tumor-Associated Macrophage Infiltration in Nasopharyngeal Carcinoma [J].
Deng, Rui ;
Lu, Juan ;
Liu, Xiong ;
Peng, Xiao-Hong ;
Wang, Jie ;
Li, Xiang-Ping .
CANCER MANAGEMENT AND RESEARCH, 2020, 12 :11585-11596