Energy-harnessing problem solving of primordial life: Modeling the emergence of catalytic host-nested parasite life cycles

被引:1
作者
Conrad, Bernard [1 ]
Iseli, Christian [2 ]
Pirovino, Magnus [3 ]
机构
[1] Genesupport, Lausanne, Switzerland
[2] EPFL & Unil, Bioinformat Competence Ctr, Lausanne, Switzerland
[3] OPIRO Consulting Ltd, Triesen, Liechtenstein
来源
PLOS ONE | 2023年 / 18卷 / 03期
关键词
EVOLUTION; BACTERIOPHAGES; ABUNDANCE; PATTERNS; MUTATION; ELEMENTS; ECOLOGY;
D O I
10.1371/journal.pone.0281661
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
All life forms on earth ultimately descended from a primordial population dubbed the last universal common ancestor or LUCA via Darwinian evolution. Extant living systems share two salient functional features, a metabolism extracting and transforming energy required for survival, and an evolvable, informational polymer-the genome-conferring heredity. Genome replication invariably generates essential and ubiquitous genetic parasites. Here we model the energetic, replicative conditions of LUCA-like organisms and their parasites, as well as adaptive problem solving of host-parasite pairs. We show using an adapted Lotka-Volterra frame-work that three host-parasite pairs-individually a unit of a host and a parasite that is itself parasitized, therefore a nested parasite pair-are sufficient for robust and stable homeostasis, forming a life cycle. This nested parasitism model includes competition and habitat restriction. Its catalytic life cycle efficiently captures, channels and transforms energy, enabling dynamic host survival and adaptation. We propose a Malthusian fitness model for a quasispecies evolving through a host-nested parasite life cycle with two core features, rapid replacement of degenerate parasites and increasing evolutionary stability of host-nested parasite units from one to three pairs.
引用
收藏
页数:17
相关论文
共 51 条
  • [1] CAMPBELL A, 1961, EVOLUTION, V15, P153, DOI 10.2307/2406076
  • [2] Cannon William R, 2014, Front Bioeng Biotechnol, V2, P53, DOI 10.3389/fbioe.2014.00053
  • [3] Regulatory activities of transposable elements: from conflicts to benefits
    Chuong, Edward B.
    Elde, Nels C.
    Feschotte, Cedric
    [J]. NATURE REVIEWS GENETICS, 2017, 18 (02) : 71 - 86
  • [4] Deniz O, 2019, NAT REV GENET, V20, P417, DOI 10.1038/s41576-019-0106-6
  • [5] Host-parasite co-evolution and its genomic signature
    Ebert, Dieter
    Fields, Peter D.
    [J]. NATURE REVIEWS GENETICS, 2020, 21 (12) : 754 - 768
  • [6] Bacteriophages benefit from mobilizing pathogenicity islands encoding immune systems against competitors
    Fillol-Salom, Alfred
    Rostol, Jakob T.
    Ojiogu, Adaeze D.
    Chen, John
    Douce, Gill
    Humphrey, Suzanne
    Penades, Jose R.
    [J]. CELL, 2022, 185 (17) : 3248 - +
  • [7] Gause GF., 1934, STRUGGLE EXISTENCE, DOI 10.5962/bhl.title.4489
  • [8] A regulatory cascade controls Staphylococcus aureus pathogenicity island activation
    Haag, Andreas F.
    Podkowik, Magdalena
    Ibarra-Chavez, Rodrigo
    Gallego del Sol, Francisca
    Ram, Geeta
    Chen, John
    Marina, Alberto
    Novick, Richard P.
    Penades, Jose R.
    [J]. NATURE MICROBIOLOGY, 2021, 6 (10) : 1300 - +
  • [9] COMPETITIVE EXCLUSION PRINCIPLE
    HARDIN, G
    [J]. SCIENCE, 1960, 131 (3409) : 1292 - 1297
  • [10] SIGNIFICANCE OF BACTERIOPHAGES FOR CONTROLLING BACTERIOPLANKTON GROWTH IN A MESOTROPHIC LAKE
    HENNES, KP
    SIMON, M
    [J]. APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 1995, 61 (01) : 333 - 340