Catechol siderophores framed on 2,3-dihydroxybenzoyl-L-serine from Streptomyces varsoviensis

被引:7
作者
Liu, Zhixiang [1 ]
Huang, Tingting [1 ,2 ]
Shi, Qing [1 ]
Deng, Zixin [1 ,2 ]
Lin, Shuangjun [1 ,2 ,3 ]
机构
[1] Shanghai Jiao Tong Univ, Sch Life Sci & Biotechnol, State Key Lab Microbial Metab, Joint Int Res Lab Metab & Dev Sci, Shanghai, Peoples R China
[2] Haihe Lab Synthet Biol, Tianjin, Peoples R China
[3] Shanghai Jiao Tong Univ, Frontiers Sci Ctr Transformat Mol, Shanghai, Peoples R China
基金
中国国家自然科学基金;
关键词
catecholate; siderophore; enterobactin; streptomyces; culture media; NRPS; MICROCIN E492; ENTEROBACTIN; BIOSYNTHESIS; ENTEROCHELIN; PRODUCTS; ASSAY;
D O I
10.3389/fmicb.2023.1182449
中图分类号
Q93 [微生物学];
学科分类号
071005 ; 100705 ;
摘要
Enterobactin is an archetypical catecholate siderophore that plays a key role in the acquisition of ferric iron by microorganisms. Catechol moieties have been shown to be promising siderophore cores. Variants of the conserved 2,3-dihydroxybenzoate (DHB) moiety with structural modifications expand the bioactivity. Streptomyces are characterized by metabolites with diverse structures. The genomic sequence of Streptomyces varsoviensis indicated that it possessed a biosynthetic gene cluster for DHB containing siderophores and metabolic profiling revealed metabolites correlated with catechol-type natural products. Here, we report the discovery of a series of catecholate siderophores produced by S. varsoviensis and a scale-up fermentation was performed to purify these compounds for structural elucidation. A biosynthetic route for the catecholate siderophores is also proposed. These new structural features enrich the structural diversity of the enterobactin family compounds. One of the new linear enterobactin congeners shows moderate activity against a food-borne pathogen Listeria monocytogenes. This work demonstrated that changing culture conditions is still a promising approach to explore unexplored chemical diversity. The availability of the biosynthetic machinery will enrich the genetic toolbox of catechol siderophores and facilitate such engineering efforts.
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页数:9
相关论文
共 39 条
[1]   Enzymatic Hydrolysis of Trilactone Siderophores: Where Chiral Recognition Occurs in Enterobactin and Bacillibactin Iron Transport [J].
Abergel, Rebecca J. ;
Zawadzka, Anna M. ;
Hoette, Trisha M. ;
Raymond, Kenneth N. .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2009, 131 (35) :12682-12692
[2]   Gapped BLAST and PSI-BLAST: a new generation of protein database search programs [J].
Altschul, SF ;
Madden, TL ;
Schaffer, AA ;
Zhang, JH ;
Zhang, Z ;
Miller, W ;
Lipman, DJ .
NUCLEIC ACIDS RESEARCH, 1997, 25 (17) :3389-3402
[3]   A universal assay for the detection of siderophore activity in natural waters [J].
Andrews, Megan Y. ;
Duckworth, Owen .
BIOMETALS, 2016, 29 (06) :1085-1095
[4]   Comparative Metabolomics Reveals a Bifunctional Antibacterial Conjugate from Combined-Culture of Streptomyces hygroscopicus HOK021 and Tsukamurella pulmonis TP-B0596 [J].
Asamizu, Shumpei ;
Pramana, Abrory Agus Cahya ;
Kawai, Sung-Jin ;
Arakawa, Yoshichika ;
Onaka, Hiroyasu .
ACS CHEMICAL BIOLOGY, 2022, :2664-2672
[5]   CD Taxonomy, Physiology, and Natural Products of Actinobacteria [J].
Barka, Essaid Ait ;
Vatsa, Parul ;
Sanchez, Lisa ;
Gaveau-Vaillant, Nathalie ;
Jacquard, Cedric ;
Klenk, Hans-Peter ;
Clement, Christophe ;
Ouhdouch, Yder ;
van Wezel, Gilles P. .
MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS, 2016, 80 (01) :1-43
[6]   Identification of a cluster of genes that directs desferrioxamine biosynthesis in Streptomyces coelicolor M145 [J].
Barona-Gómez, F ;
Wong, U ;
Giannakopulos, AE ;
Derrick, PJ ;
Challis, GL .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2004, 126 (50) :16282-16283
[7]   NMR-STUDIES OF DIMERIC 2,3-DIHYDROXY-N-BENZOYL SERINE [J].
BERGSTROM, CP ;
LU, MC ;
BELL, CL .
JOURNAL OF NATURAL PRODUCTS, 1991, 54 (04) :1003-1008
[8]   Marfey's reagent for chiral amino acid analysis:: A review [J].
Bhushan, R ;
Brückner, H .
AMINO ACIDS, 2004, 27 (3-4) :231-247
[9]   antiSMASH 5.0: updates to the secondary metabolite genome mining pipeline [J].
Blin, Kai ;
Shaw, Simon ;
Steinke, Katharina ;
Villebro, Rasmus ;
Ziemert, Nadine ;
Lee, Sang Yup ;
Medema, Marnix H. ;
Weber, Tilmann .
NUCLEIC ACIDS RESEARCH, 2019, 47 (W1) :W81-W87
[10]   Proof of Concept for the Detection with Custom Printed Electrodes of Enterobactin as a Marker of Escherichia coli [J].
Canciu, Alexandra ;
Cernat, Andreea ;
Tertis, Mihaela ;
Botarca, Silvia ;
Bordea, Madalina Adriana ;
Wang, Joseph ;
Cristea, Cecilia .
INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES, 2022, 23 (17)