Drug discovery and optimization based on the co-crystal structure of natural product with target

被引:7
作者
Chen, Xing [1 ,3 ]
Varghese, Swapna [2 ]
Zhang, Zhaoyan [1 ]
Du, Juncheng [1 ]
Ruan, Banfeng [4 ]
Baell, Jonathan B. [2 ]
Liu, Xinhua [1 ]
机构
[1] Anhui Med Univ, Sch Pharm, Inflammat & Immune Mediated Dis Lab Anhui Prov, Hefei 230032, Peoples R China
[2] Monash Univ, Monash Inst Pharmaceut Sci, Med Chem, Melbourne, Vic 3052, Australia
[3] Anhui Med Univ, Sch Publ Hlth, Key Lab Populat Hlth Life Cycle, Hefei 230032, Peoples R China
[4] Hefei Univ, Key Lab Biofabricat Anhui Higher Educ, Hefei 230601, Peoples R China
基金
中国博士后科学基金;
关键词
BISTRAMIDE-A; CELL-CYCLE; PROTEIN PHOSPHATASE-1; RAPAMYCIN AY-22,989; IN-VITRO; INHIBITION; COMPLEX; PACTAMYCIN; POTENT; GELDANAMYCIN;
D O I
10.1016/j.ejmech.2024.116126
中图分类号
R914 [药物化学];
学科分类号
100701 ;
摘要
Due to their structural diversities and prevalent biological activities, natural products (NPs) are momentous resources for drug discovery. Although NPs have a wide range of biological activities, many exhibit structural complexity that leads to synthetic difficulties, which combines with inefficient biological activity, toxicity, and unfavorable pharmacokinetic characteristics and ultimately imparts poor safety and efficacy outcomes. Progress in crystallization and computational techniques allow crystallography to have a seasonable influences on drug discovery. By co -crystallizing with proteins, therapeutic targets of NPs in specific diseases can be identified. By analyzing the co -crystal information, the structure -activity relationships (SARs) of NPs targeting specific proteins can be grasped. Under the guidance of co -crystal information, directional structural modification and simplification are powerful strategies for overcoming limitations of NPs, improving the success rate of NP -based drug discovery, and obtaining NP -based drugs with high selectivity, low toxicity and favorable pharmacokinetic characteristics. Here, we review the cocrystal information of a selection of NPs, focusing on the SARs of NPs reflected by co -crystal information and the modification and simplification strategies of NPs, and discuss how to apply co -crystal information in the optimization of NP -based lead compound.
引用
收藏
页数:12
相关论文
共 50 条
  • [31] Discovery and optimization of highly ligand-efficient oxytocin receptor antagonists using structure-based drug design
    Bellenie, Benjamin R.
    Barton, Nicholas P.
    Emmons, Amanda J.
    Heer, Jag P.
    Salvagno, Cristian
    BIOORGANIC & MEDICINAL CHEMISTRY LETTERS, 2009, 19 (03) : 990 - 994
  • [32] Recent Advances and Future Challenges in Drug Discovery for Leishmaniasis Based on Natural Products
    Lago, Joao Henrique Ghilardi
    Passero, Luiz Felipe Domingues
    CURRENT ORGANIC CHEMISTRY, 2023, 27 (05) : 379 - 383
  • [33] Fragment-Based Drug Discovery: Advancing Fragments in the Absence of Crystal Structures
    Erlanson, Daniel A.
    Davis, Ben J.
    Jahnke, Wolfgang
    CELL CHEMICAL BIOLOGY, 2019, 26 (01): : 9 - 15
  • [34] Impact of Computational Structure-Based Predictive Toxicology in Drug Discovery
    Mohan, Chethampadi Gopi
    COMBINATORIAL CHEMISTRY & HIGH THROUGHPUT SCREENING, 2011, 14 (05) : 417 - 426
  • [35] Computer-Assisted Drug Virtual Screening Based on the Natural Product Databases
    Yang, Baoyu
    Ma, Jing
    Gao, Bing
    Lu, Xiuli
    CURRENT PHARMACEUTICAL BIOTECHNOLOGY, 2019, 20 (04) : 293 - 301
  • [36] Crystal Structure of African Swine Fever Virus dUTPase Reveals a Potential Drug Target
    Li, Changyao
    Chai, Yan
    Song, Hao
    Weng, Changjiang
    Qi, Jianxun
    Sun, Yeping
    Gao, George F.
    MBIO, 2019, 10 (05):
  • [37] Anticancer Drug Discovery Based on Natural Products: From Computational Approaches to Clinical Studies
    Chunarkar-Patil, Pritee
    Kaleem, Mohammed
    Mishra, Richa
    Ray, Subhasree
    Ahmad, Aftab
    Verma, Devvret
    Bhayye, Sagar
    Dubey, Rajni
    Singh, Himanshu Narayan
    Kumar, Sanjay
    BIOMEDICINES, 2024, 12 (01)
  • [38] Identification and X-ray Co-crystal Structure of a Small-Molecule Activator of LFA-1-ICAM-1 Binding
    Hintersteiner, Martin
    Kallen, Joerg
    Schmied, Mario
    Graf, Christine
    Jung, Thomas
    Mudd, Gemma
    Shave, Steven
    Gstach, Hubert
    Auer, Manfred
    ANGEWANDTE CHEMIE-INTERNATIONAL EDITION, 2014, 53 (17) : 4322 - 4326
  • [39] Discovery of natural product inhibitors of phosphodiesterase 10A as novel therapeutic drug for schizophrenia using a multistep virtual screening
    Al-Nema, Mayasah
    Gaurav, Anand
    Akowuah, Gabriel
    COMPUTATIONAL BIOLOGY AND CHEMISTRY, 2018, 77 : 52 - 63
  • [40] Physiologically based pharmacokinetic model predictions of natural product-drug interactions between goldenseal, berberine, imatinib and bosutinib
    Adiwidjaja, Jeffry
    Boddy, Alan, V
    McLachlan, Andrew J.
    EUROPEAN JOURNAL OF CLINICAL PHARMACOLOGY, 2022, 78 (04) : 597 - 611