A high-quality, long-read genome assembly of the whitelined sphinx moth (Lepidoptera: Sphingidae: Hyles lineata) shows highly conserved melanin synthesis pathway genes

被引:2
|
作者
Godfrey, R. Keating [1 ,4 ]
Britton, Sarah E. [2 ]
Mishra, Shova [3 ]
Goldberg, Jay K. [2 ]
Kawahara, Akito Y. [1 ]
机构
[1] Univ Florida, McGuire Ctr Lepidoptera & Biodivers, Florida Museum Nat Hist, 3215 Hull Rd, Gainesville, FL 32611 USA
[2] Univ Arizona, Dept Ecol & Evolutionary Biol, 1041 E Lowell St, Tucson, AZ 85721 USA
[3] Univ Florida, Dept Entomol & Nematol, 1881 Nat Area Dr, Gainesville, FL 32608 USA
[4] Univ Florida, McGuire Ctr Lepidoptera & Biodivers, Florida Museum Nat Hist, 3215 Hull Rd, Gainesville, FL 32611 USA
来源
G3-GENES GENOMES GENETICS | 2023年 / 13卷 / 06期
基金
美国国家科学基金会;
关键词
Lepidoptera; whitelined sphinx; Hyles lineata; genome assembly; melanin synthesis genes; ANNOTATION; PHYLOGENY; DIVERSITY; ALIGNMENT; HABITAT; COLOR;
D O I
10.1093/g3journal/jkad090
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
The sphinx moth genus Hyles comprises 29 described species inhabiting all continents except Antarctica. The genus diverged relatively recently (40-25 MYA), arising in the Americas and rapidly establishing a cosmopolitan distribution. The whitelined sphinx moth, Hyles lineata, represents the oldest extant lineage of this group and is one of the most widespread and abundant sphinx moths in North America. Hyles lineata exhibits the large body size and adept flight control characteristic of the sphinx moth family (Sphingidae), but it is unique in displaying extreme larval color variation and broad host plant use. These traits, in combination with its broad distribution and high relative abundance within its range, have made H. lineata a model organism for studying phenotypic plasticity, plant-herbivore interactions, physiological ecology, and flight control. Despite being one of the most well-studied sphinx moths, little data exist on genetic variation or regulation of gene expression. Here, we report a high-quality genome showing high contiguity (N50 of 14.2 Mb) and completeness (98.2% of Lepidoptera BUSCO genes), an important first characterization to facilitate such studies. We also annotate the core melanin synthesis pathway genes and confirm that they have high sequence conservation with other moths and are most similar to those of another, well-characterized sphinx moth, the tobacco hornworm (Manduca sexta).
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页数:7
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