Genome-Wide Association Study for Body Weight and Carcass Weight in Sumba Ongole Bulls (Bos indicus)

被引：0
|
作者：
Hartati [1 ]
Putra, W. P. B. [2 ]
机构：
[1] Natl Res & Innovat Agcy BRIN, Res Ctr Anim Husb, Bogor 16911, West Java, Indonesia
[2] Natl Res & Innovat Agcy BRIN, Res Ctr Appl Zool, Bogor 16911, West Java, Indonesia
来源：
TROPICAL ANIMAL SCIENCE JOURNAL | 2023年 / 46卷 / 04期
关键词：
body weight; carcass weight; GWAS; SNP marker; Sumba Ongole bulls; FATTY-ACID-COMPOSITION; CATTLE; TRAITS; HANWOO; GAIN;
D O I：
10.5398/tasj.2023.46.4.389
中图分类号：
S8 [畜牧、 动物医学、狩猎、蚕、蜂];
学科分类号：
0905 ;
摘要：
Sumba Ongole (Bos indicus) is a native beef cattle that adapts well in Sumba Island of Indonesia. This study was carried out to perform a genome-wide association study for body weight (BW) and carcass weight (CW) in Sumba Ongole (SO) bulls. A total of forty-eight (n=48) SO bulls were used in this study. The data were collected from the slaughterhouse at Bogor City, West Java, Indonesia, and were analyzed using a genomic software of TASSEL 5.0 to obtain the best genetic marker. The result showed that the threshold Manhattan plot (-Log10P3) was used to select SNP markers for BW and CW in SO bulls. The two (2) SNP markers at BTA1, i.e., ARS-BFGL-NGS-3162 (CEP63 gene) and ARS-BFGL-NGS-78232 were significantly associated with BW and CW, respectively. Nonetheless, the genetic diversity in both SNP markers was low, with a PIC value of less than 0.30. In conclusion, the heterozygous TG bulls in CEP63 gene have higher CW than homozygous TT bulls.
引用
收藏
页码：389 / 395
页数：7
相关论文
共 50 条
  • [31] Genome-wide identification of SNPs associated with body weight in yak
    Hui Jiang
    Zhi-Xin Chai
    Han-Wen Cao
    Cheng-Fu Zhang
    Yong Zhu
    Qiang Zhang
    Jin-Wei Xin
    BMC Genomics, 23
  • [32] Genome-Wide Association Study Identifies 12 Loci Associated with Body Weight at Age 8 Weeks in Korean Native Chickens
    Cha, Jihye
    Choo, Hyojun
    Srikanth, Krishnamoorthy
    Lee, Seung-Hwan
    Son, Ju-Whan
    Park, Mi-Rim
    Kim, Nayeon
    Jang, Gul Won
    Park, Jong-Eun
    GENES, 2021, 12 (08)
  • [33] Genome-wide association study reveals candidate genes relevant to body weight in female turkeys (Meleagris gallopavo)
    Abdalla, Emhimad A. E.
    Makanjuola, Bayode O.
    Wood, Benjamin J.
    Baes, Christine F.
    PLOS ONE, 2022, 17 (03):
  • [34] SNPs associated with body weight and backfat thickness in two pig breeds identified by a genome-wide association study
    Yang, Qiang
    Wu, Pingxian
    Wang, Kai
    Chen, Dejuan
    Zhou, Jie
    Ma, Jideng
    Li, Mingzhou
    Xiao, Weihang
    Jiang, Anan
    Jiang, Yanzhi
    Bai, Lin
    Zhu, Li
    Li, Xuewei
    Tang, Guoqing
    GENOMICS, 2019, 111 (06) : 1583 - 1589
  • [35] Genomic Selection and Genome-Wide Association Analysis for Stress Response, Disease Resistance and Body Weight in European Seabass
    Oikonomou, Stavroula
    Samaras, Athanasios
    Tekeoglou, Maria
    Loukovitis, Dimitrios
    Dimitroglou, Arkadios
    Kottaras, Lefteris
    Papanna, Kantham
    Papaharisis, Leonidas
    Tsigenopoulos, Costas S.
    Pavlidis, Michail
    Chatziplis, Dimitrios
    ANIMALS, 2022, 12 (03):
  • [36] Genome-wide association study of body weight in Wenshang Barred chicken based on the SLAF-seq technology
    Fuwei Li
    Haixia Han
    Qiuxia Lei
    Jinbo Gao
    Jie Liu
    Wei Liu
    Yan Zhou
    Huimin Li
    Dingguo Cao
    Journal of Applied Genetics, 2018, 59 : 305 - 312
  • [37] Evaluation of village-based diets for increasing the weight and condition of Ongole (Bos indicus) and Bali (Bos java']javanicus) cows in Indonesia
    Antari, R.
    Syahniar, T. M.
    Mayberry, D. E.
    Marsetyo
    Pamungkas, D.
    Anderson, S. T.
    Poppi, D. P.
    ANIMAL PRODUCTION SCIENCE, 2014, 54 (09) : 1368 - 1373
  • [38] Genome-wide association study for semen traits of the bulls in Chinese Holstein
    Qin, Chunhua
    Yin, Hongwei
    Zhang, Xu
    Sun, Dongxiao
    Zhang, Qin
    Liu, Jianfeng
    Ding, Xiangdong
    Zhang, Yi
    Zhang, Shengli
    ANIMAL GENETICS, 2017, 48 (01) : 80 - 84
  • [39] Genome-wide association study for postweaning weight traits in Lori-Bakhtiari sheep
    Almasi, Mohammad
    Zamani, Pouya
    Mirhoseini, Seyed Ziaeddin
    Moradi, Mohammad Hossein
    TROPICAL ANIMAL HEALTH AND PRODUCTION, 2021, 53 (01)
  • [40] Bayes factors revealed selection signature for time to market body weight in chicken: a genome-wide association study using BayesCpi methodology
    Asgari, Zeinab
    Ehsani, Alireza
    Masoudi, Ali Akbar
    Torshizi, Rasoul Vaez
    ITALIAN JOURNAL OF ANIMAL SCIENCE, 2021, 20 (01) : 1468 - 1478
12345