Genome-Wide Association Study for Body Weight and Carcass Weight in Sumba Ongole Bulls (Bos indicus)

被引：0
|
作者：
Hartati [1 ]
Putra, W. P. B. [2 ]
机构：
[1] Natl Res & Innovat Agcy BRIN, Res Ctr Anim Husb, Bogor 16911, West Java, Indonesia
[2] Natl Res & Innovat Agcy BRIN, Res Ctr Appl Zool, Bogor 16911, West Java, Indonesia
来源：
TROPICAL ANIMAL SCIENCE JOURNAL | 2023年 / 46卷 / 04期
关键词：
body weight; carcass weight; GWAS; SNP marker; Sumba Ongole bulls; FATTY-ACID-COMPOSITION; CATTLE; TRAITS; HANWOO; GAIN;
D O I：
10.5398/tasj.2023.46.4.389
中图分类号：
S8 [畜牧、 动物医学、狩猎、蚕、蜂];
学科分类号：
0905 ;
摘要：
Sumba Ongole (Bos indicus) is a native beef cattle that adapts well in Sumba Island of Indonesia. This study was carried out to perform a genome-wide association study for body weight (BW) and carcass weight (CW) in Sumba Ongole (SO) bulls. A total of forty-eight (n=48) SO bulls were used in this study. The data were collected from the slaughterhouse at Bogor City, West Java, Indonesia, and were analyzed using a genomic software of TASSEL 5.0 to obtain the best genetic marker. The result showed that the threshold Manhattan plot (-Log10P3) was used to select SNP markers for BW and CW in SO bulls. The two (2) SNP markers at BTA1, i.e., ARS-BFGL-NGS-3162 (CEP63 gene) and ARS-BFGL-NGS-78232 were significantly associated with BW and CW, respectively. Nonetheless, the genetic diversity in both SNP markers was low, with a PIC value of less than 0.30. In conclusion, the heterozygous TG bulls in CEP63 gene have higher CW than homozygous TT bulls.
引用
收藏
页码：389 / 395
页数：7
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