Enhancement of thermal stability of Bacillus subtilis 168 glycosyltransferase YjiC based on PoPMuSiC algorithm and its catalytic conversion of rare ginsenoside PPD

被引:9
作者
Guo, Hua [1 ]
Li, Weina [1 ,3 ]
Zhu, Chenhui [1 ]
Chen, Yanru [1 ]
Dalby, Paul A. [2 ]
Fan, Daidi [1 ,3 ]
机构
[1] Northwest Univ, Biotech & Biomed Res Inst, Shaanxi R&D Ctr Biomaterials& Fermentat Engn, Sch Chem Engn, Xian 710069, Shaanxi, Peoples R China
[2] UCL, Dept Biochem Engn, London WC1E 6BT, England
[3] Northwest Univ, Sch Chem Engn, 229 North Taibai Rd, Xian 710069, Shaanxi, Peoples R China
关键词
Glycosyltransferase Bs-YjiC; PoPMuSiC; Thermostability; Molecular dynamics simulations; Ginsenoside PPD; ALPHA-L-ARABINOFURANOSIDASE; RATIONAL DESIGN; THERMOSTABILITY; MECHANISM; SPECIFICITY; IMPROVEMENT; LANDSCAPE;
D O I
10.1016/j.procbio.2023.07.005
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
YjiC, a glycosyltransferase from Bacillus subtilis 168, has great promise for natural product biosynthesis due to its aglycon promiscuity. In this study, the K125I/N178I variant with target residues located away from the substrate binding site was selected based on PoPMuSiC algorithm prediction and combined mutagenesis. The melting temperature (Tm) and t1/2 at 55 & DEG;C were increased by 7.2 & DEG;C and 18 min, respectively. Enzyme kinetic analysis revealed that the Km value of K125I/N178I was reduced by 11.4% but had a 1.21-fold increase in catalytic efficiency. Analysis of thermal stability mechanisms through fluorescence spectroscopy, LigPlot+ and molecular dynamics (MD) simulation showed that the increase in hydrophobic interactions and reduced structural flexibility are the main determinant factors for improved thermal stability. Finally, a ginsenoside PPD transformation system coupling Bs-YjiC and sucrose synthase (SuSy) was established at 45 & DEG;C using sucrose as the sugar donor. The space-time yield (STY) of ginsenoside F12 (415 mg L-1 h-1) was 1.3 times higher than in previous studies. This is the first report on engineered Bs-YjiC for thermal stability improvement by rational design in industrial production of rare ginsenosides.
引用
收藏
页码:1 / 12
页数:12
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