Temperature-dependent RNA editing in octopus extensively recodes the neural proteome

被引:46
作者
Birk, Matthew A. [1 ,2 ]
Liscovitch-Brauer, Noa [3 ]
Dominguez, Matthew J. [4 ]
McNeme, Sean [5 ]
Yue, Yang [6 ]
Hoff, J. Damon [7 ]
Twersky, Itamar [8 ]
Verhey, Kristen J. [6 ]
Sutton, R. Bryan [4 ]
Eisenberg, Eli [3 ]
Rosenthal, Joshua J. C. [1 ]
机构
[1] Marine Biol Lab, Bell Ctr, Woods Hole, MA 02543 USA
[2] St Francis Univ, Dept Biol, Loretto, PA 15940 USA
[3] Tel Aviv Univ, Sch Phys & Astron, IL-69978 Tel Aviv, Israel
[4] Texas Tech Univ, Hlth Sci Ctr, Dept Cell Physiol & Mol Biophys, Lubbock, TX 79410 USA
[5] Univ Texas Med Branch, Dept Biochem & Mol Biol, Galveston, TX 77550 USA
[6] Univ Michigan, Med Sch, Dept Cell & Dev Biol, Ann Arbor, MI 48109 USA
[7] Univ Michigan, Dept Biophys, Ann Arbor, MI 48109 USA
[8] Bar Ilan Univ, Mina & Everard Goodman Fac Life Sci, Nano Ctr, Ramat Gan, Israel
关键词
GENOME-WIDE ANALYSIS; SYNAPTIC-TRANSMISSION; POTASSIUM CHANNELS; AXONAL-TRANSPORT; MESSENGER-RNAS; SYNAPTOTAGMIN; ADAPTATION; SITES; DIVERSIFICATION; IDENTIFICATION;
D O I
10.1016/j.cell.2023.05.004
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
In poikilotherms, temperature changes challenge the integration of physiological function. Within the com-plex nervous systems of the behaviorally sophisticated coleoid cephalopods, these problems are substan-tial. RNA editing by adenosine deamination is a well-positioned mechanism for environmental acclimation. We report that the neural proteome of Octopus bimaculoides undergoes massive reconfigurations via RNA editing following a temperature challenge. Over 13,000 codons are affected, and many alter proteins that are vital for neural processes. For two highly temperature-sensitive examples, recoding tunes protein function. For synaptotagmin, a key component of Ca2+-dependent neurotransmitter release, crystal struc-tures and supporting experiments show that editing alters Ca2+ binding. For kinesin-1, a motor protein driving axonal transport, editing regulates transport velocity down microtubules. Seasonal sampling of wild-caught specimens indicates that temperature-dependent editing occurs in the field as well. These data show that A-to-I editing tunes neurophysiological function in response to temperature in octopus and most likely other coleoids.
引用
收藏
页码:2544 / +
页数:26
相关论文
共 98 条
[1]  
Ahuja N., 2023, CURR BIOL, DOI [10.2139/ssrn.4369821, DOI 10.2139/SSRN.4369821]
[2]   Genome and transcriptome mechanisms driving cephalopod evolution [J].
Albertin, Caroline B. ;
Medina-Ruiz, Sofia ;
Mitros, Therese ;
Schmidbaur, Hannah ;
Sanchez, Gustavo ;
Wang, Z. Yan ;
Grimwood, Jane ;
Rosenthal, Joshua J. C. ;
Ragsdale, Clifton W. ;
Simakov, Oleg ;
Rokhsar, Daniel S. .
NATURE COMMUNICATIONS, 2022, 13 (01)
[3]   The octopus genome and the evolution of cephalopod neural and morphological novelties [J].
Albertin, Caroline B. ;
Simakov, Oleg ;
Mitros, Therese ;
Wang, Z. Yan ;
Pungor, Judit R. ;
Edsinger-Gonzales, Eric ;
Brenner, Sydney ;
Ragsdale, Clifton W. ;
Rokhsar, Daniel S. .
NATURE, 2015, 524 (7564) :220-+
[4]   The majority of transcripts in the squid nervous system are extensively recoded by A-to-I RNA editing [J].
Alon, Shahar ;
Garrett, Sandra C. ;
Levanon, Erez Y. ;
Olson, Sara ;
Graveley, Brenton R. ;
Rosenthal, Joshua J. C. ;
Eisenberg, Eli .
ELIFE, 2015, 4
[5]   Widespread A-to-I RNA editing of alu-containing mRNAs in the human transcriptome [J].
Athanasiadis, A ;
Rich, A ;
Maas, S .
PLOS BIOLOGY, 2004, 2 (12) :2144-2158
[6]   Identification of exceptionally potent adenosine deaminases RNA editors from high body temperature organisms [J].
Avram-Shperling, Adi ;
Kopel, Eli Y. ;
Twersky, Itamar ;
Gabay, Orshay ;
Ben-David, Amit ;
Karako-Lampert, Sarit ;
Rosenthal, Joshua J. C. ;
Levanon, Erez ;
Eisenberg, Eli ;
Ben-Aroya, Shay .
PLOS GENETICS, 2023, 19 (03)
[7]   A-to-I RNA editing occurs at over a hundred million genomic sites, located in a majority of human genes [J].
Bazak, Lily ;
Haviv, Ami ;
Barak, Michal ;
Jacob-Hirsch, Jasmine ;
Deng, Patricia ;
Zhang, Rui ;
Isaacs, Farren J. ;
Rechavi, Gideon ;
Li, Jin Billy ;
Eisenberg, Eli ;
Levanon, Erez Y. .
GENOME RESEARCH, 2014, 24 (03) :365-376
[8]  
Birk M.A., 2021, respirometry: Tools for Conducting and Analyzing Respirometry Experiments
[9]   A survey of RNA editing in human brain [J].
Blow, M ;
Futreal, PA ;
Wooster, R ;
Stratton, MR .
GENOME RESEARCH, 2004, 14 (12) :2379-2387
[10]   Dynamic hyper-editing underlies temperature adaptation in Drosophila [J].
Buchumenski, Ilana ;
Bartok, Osnat ;
Ashwal-Fluss, Reut ;
Pandey, Varun ;
Porath, Hagit T. ;
Levanon, Erez Y. ;
Kadener, Sebastian .
PLOS GENETICS, 2017, 13 (07)