DNA barcoding, an effective tool for species identification: a review

被引:109
作者
Antil, Sandeep [1 ]
Abraham, Jeeva Susan [1 ]
Sripoorna, S. [1 ]
Maurya, Swati [1 ]
Dagar, Jyoti [1 ]
Makhija, Seema [1 ]
Bhagat, Pooja [1 ]
Gupta, Renu [2 ]
Sood, Utkarsh [3 ]
Lal, Rup [3 ]
Toteja, Ravi [1 ]
机构
[1] Univ Delhi, Acharya Narendra Dev Coll, Delhi, India
[2] Univ Delhi, Maitreyi Coll, Delhi 110021, India
[3] Energy & Resources Inst, IHC Complex, New Delhi 110003, India
关键词
Biodiversity; DNA barcoding; Next-generation sequencing (NGS); Oxford Nanopore Technologies (ONT)'s MinION (TM); PacBio sequencing; Consortium for barcode of life (CBOL); INTERNAL TRANSCRIBED SPACER; RIBOSOMAL-RNA GENE; MITOCHONDRIAL GENES; ARCHAEA; NUCLEAR; NANOPARTICLES; CILIOPHORA; DIVERSITY; SEQUENCES; SYSTEM;
D O I
10.1007/s11033-022-08015-7
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
DNA barcoding is a powerful taxonomic tool to identify and discover species. DNA barcoding utilizes one or more standardized short DNA regions for taxon identification. With the emergence of new sequencing techniques, such as Next-generation sequencing (NGS), ONT MinION nanopore sequencing, and Pac Bio sequencing, DNA barcoding has become more accurate, fast, and reliable. Rapid species identification by DNA barcodes has been used in a variety of fields, including forensic science, control of the food supply chain, and disease understanding. The Consortium for Barcode of Life (CBOL) presents various working groups to identify the universal barcode gene, such as COI in metazoans; rbcL, matK, and ITS in plants; ITS in fungi; 16S rRNA gene in bacteria and archaea, and creating a reference DNA barcode library. In this article, an attempt has been made to analyze the various proposed DNA barcode for different organisms, strengths & limitations, recent advancements in DNA barcoding, and methods to speed up the DNA barcode reference library construction. This study concludes that constructing a reference library with high species coverage would be a major step toward identifying species by DNA barcodes. This can be achieved in a short period of time by using advanced sequencing and data analysis methods.
引用
收藏
页码:761 / 775
页数:15
相关论文
共 50 条
  • [31] DNA barcoding for efficient identification of Ixiolirion species (Ixioliriaceae)
    Zhao, Y.
    Li, Y.
    Liu, Y.
    Yang, Y. F.
    GENETICS AND MOLECULAR RESEARCH, 2015, 14 (01): : 1903 - 1910
  • [32] DNA barcoding as a tool for identification of host association of root-hemiparasitic plants
    Hola, Eva
    Kockova, Jitka
    Tesitel, Jakub
    FOLIA GEOBOTANICA, 2017, 52 (02) : 227 - 238
  • [33] Identification of Species in Tripterygium (Celastraceae) Based on DNA Barcoding
    Zhang, Xiaomei
    Li, Na
    Yao, Yuanyuan
    Liang, Xuming
    Qu, Xianyou
    Liu, Xiang
    Zhu, Yingjie
    Yang, Dajian
    Sun, Wei
    BIOLOGICAL & PHARMACEUTICAL BULLETIN, 2016, 39 (11) : 1760 - 1766
  • [34] Genetic identification of two species of Pleuronichthys by DNA barcoding
    Hui Zhang
    Yan Zhang
    Tianxiang Gao
    Pengfei Li
    Hanxiang Xu
    Chinese Journal of Oceanology and Limnology, 2011, 29 : 967 - 972
  • [35] Genetic identification of two species of Pleuronichthys by DNA barcoding
    Zhang Hui
    Zhang Yan
    Gao Tianxiang
    Li Pengfei
    Xu Hanxiang
    CHINESE JOURNAL OF OCEANOLOGY AND LIMNOLOGY, 2011, 29 (05) : 967 - 972
  • [36] Genetic identification of two species of Pleuronichthys by DNA barcoding
    张辉
    张岩
    高天翔
    李鹏飞
    徐汉祥
    Journal of Oceanology and Limnology, 2011, (05) : 967 - 972
  • [37] DNA barcoding of bird species in Cyprus: a tool for conservation purposes
    Dimitriou, Andreas C.
    Forcina, Giovanni
    Papazoglou, Clairie
    Panayides, Panicos
    Guerrini, Monica
    Crabtree, Alan
    Barbanera, Filippo
    Sfenthourakis, Spyros
    BIRD CONSERVATION INTERNATIONAL, 2017, 27 (04) : 483 - 494
  • [38] Species Abundance and Identification of Forensically Important Flies of Saudi Arabia by DNA Barcoding
    Mashaly, Ashraf
    Alajmi, Reem
    Mustafa, Abd El-Zaher
    Rady, Ahmed
    Alkhedir, Hussein
    JOURNAL OF MEDICAL ENTOMOLOGY, 2017, 54 (04) : 837 - 843
  • [39] DNA Barcoding of Endemic and Endangered Orchids of India: A Molecular Method of Species Identification
    Srivastava, Deepti
    Manjunath, K.
    PHARMACOGNOSY MAGAZINE, 2020, 16 (70) : S290 - S299
  • [40] DNA barcoding of animal and plant species as an approach for their molecular identification and describing of diversity
    Shneyer, V. S.
    ZHURNAL OBSHCHEI BIOLOGII, 2009, 70 (04): : 296 - 315